| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,829,345 – 8,829,462 |
| Length | 117 |
| Max. P | 0.562083 |
| Location | 8,829,345 – 8,829,462 |
|---|---|
| Length | 117 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.07 |
| Mean single sequence MFE | -32.94 |
| Consensus MFE | -25.00 |
| Energy contribution | -24.15 |
| Covariance contribution | -0.85 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.562083 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8829345 117 + 27905053 AGGAACUGGAGGAUCUGCGCUGCCAGUUUCUGGACAUCUAUUUCAAGGAGUUCAUUGACAAGUAUGAGAUGAAGACCUUG---ACGGCUGCAGGCGGCCGGAAAAAGGAGAAGAAGCGCA (((((((((((........)).))))))))).....(((...((((((..((((((..((....)).))))))..)))))---)((((((....))))))........)))......... ( -36.90) >DroVir_CAF1 4226 117 + 1 AGGAACUGGAGGAUUUGCGCGGUCAGUUCCUCGAUAUCUAUUUCAAGGAAUUCAUUGACAAAUAUGAAAUGAAAACCUUA---ACGGCUGCUGGCGGCCGCAAACGCGAAAAGAAACGCA (((((((((..(.......)..))))))))).....(((.((((((((..((((((..((....)).))))))..)))).---.((((((....)))))).......)))))))...... ( -32.30) >DroGri_CAF1 3870 120 + 1 AGGAACUGGAGGAUCUGCGCAACCAGUUUCUCGAUAUCUACUUCAAGGAGUUCAUUGACAAAUACGAGAUGAAAACCCUAACAACGGCUGCUGGCGGCCGCAAGCGCGAAAAGAAACGCA (((((((((..(.......)..)))))))))..............(((..((((((..(......).))))))...))).....((((((....)))))).....(((........))). ( -30.20) >DroWil_CAF1 3558 117 + 1 AAGAGUUGGAGGAUUUGCGUAGUCAGUUCCUUGAUAUUUAUUUCAAGGAAUUUAUUGGCAAAUACGAAAUGCGCACUUUA---ACGGCUGCAGGCGGCCGAAAGCGUGAGAAGAAACGCA ....(((((((.((((((.((((.((((((((((........)))))))))).)))))))))).((.....))..)))))---))(((((....)))))....((((........)))). ( -41.00) >DroMoj_CAF1 4051 117 + 1 GGGAGCUGGAGGAUUUGCGCCGUCAAUUCCUCGACAUCUACUUCAAGGAGUUCAUCGACAAAUAUGAGAUGCGAACCUUA---ACGGCUGCUGGCGGCCGCAAGCGCGAAAAGAAACGAA ....(((.((((.((((((.(.((((((..((((.....((((....))))...))))..))).)))).)))))))))).---.((((((....))))))..)))............... ( -31.40) >DroAna_CAF1 3775 117 + 1 AAGAACUGGAGGAUUUGCGGGGACAGUUCUUGGACAUAUAUUUUAAGGAGUUCAUUGAUAAGUACGAGAUGAAGGCUCUC---ACGGCUGCUGGCGGCCGGAAAAAAGAGAAGAAGCGCA ((((((((...............))))))))...............((((((((((...........)))))..))))).---.((((((....)))))).................... ( -25.86) >consensus AGGAACUGGAGGAUUUGCGCAGUCAGUUCCUCGACAUCUAUUUCAAGGAGUUCAUUGACAAAUACGAGAUGAAAACCUUA___ACGGCUGCUGGCGGCCGCAAACGCGAAAAGAAACGCA (((((((((.(......)....))))))))).....(((.((((((((..((((((...........))))))..)))).....((((((....)))))).......)))))))...... (-25.00 = -24.15 + -0.85)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:54 2006