Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,825,114 – 8,825,205 |
Length | 91 |
Max. P | 0.752635 |
Location | 8,825,114 – 8,825,205 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 88.66 |
Mean single sequence MFE | -24.44 |
Consensus MFE | -17.56 |
Energy contribution | -18.68 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.08 |
Mean z-score | -2.08 |
Structure conservation index | 0.72 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.752635 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8825114 91 - 27905053 UCUUUGGAUCCUCAGAGAACAGGCGCAUGUUCUCAAUGGCCAUCUGAAAAGAAGGUGAACGAUAGUGAGUAUUUACUGAGAAAGCUUUAUA- (((((((((.(((((((((((......)))))))..(.(((.(((....))).))).).......)))).)))))..))))..........- ( -24.80) >DroSec_CAF1 3729 91 - 1 UCUUUGGAUCCUCAGAGAACAGGCGCAUGUUCUCAAUGGCCAUCUGAAAACAAGGUGAACGAUAGUGAGUAUCUAUUAAGAAAGCUUUAUA- (((((((((.(((((((((((......)))))))..((..(((((.......)))))..))....)))).)))))..))))..........- ( -25.00) >DroSim_CAF1 3728 91 - 1 UCUUUGGAUCCUCAGAGAACAGGCGCAUGUUCUCAAUGGCCAUCUGAAAACAAGGUGAACGAUAGUGAGUAUUUAUUAAGAAAGCUUAAUA- (((((((((.(((((((((((......)))))))..((..(((((.......)))))..))....)))).)))))..))))..........- ( -22.30) >DroEre_CAF1 3848 91 - 1 UCUUUGGAUCCUCAGAGAACAGGCGCAUGUUCUCAAUGGCCAUCUAAAA-GAGUGUCAGAGCUUGUGAGUAUUUAUUCAGAAAGCUUGAUUA (((((((((((...(((((((......)))))))...))..)))).)))-))..((((.(((((.(((((....)))))..))))))))).. ( -26.30) >DroYak_CAF1 3745 92 - 1 UCUUUGGAUCCUCAGAGAACAGGCGCAUGUUCUCAAUGGCCAUCUGAAAAGAUGAUAAUGGAUAGUUAGUAUUUAUUAAGAAGGCUUGGUAG .((....((((...(((((((......)))))))......(((((....))))).....))))....))....(((((((....))))))). ( -23.80) >consensus UCUUUGGAUCCUCAGAGAACAGGCGCAUGUUCUCAAUGGCCAUCUGAAAAGAAGGUGAACGAUAGUGAGUAUUUAUUAAGAAAGCUUGAUA_ (((((((((.(((((((((((......)))))))....(((.(((....))).))).........)))).)))))..))))........... (-17.56 = -18.68 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:49 2006