Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,818,001 – 8,818,121 |
Length | 120 |
Max. P | 0.798747 |
Location | 8,818,001 – 8,818,121 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.50 |
Mean single sequence MFE | -35.46 |
Consensus MFE | -28.24 |
Energy contribution | -27.40 |
Covariance contribution | -0.84 |
Combinations/Pair | 1.25 |
Mean z-score | -1.69 |
Structure conservation index | 0.80 |
SVM decision value | 0.61 |
SVM RNA-class probability | 0.798747 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8818001 120 + 27905053 UGCUGGCUAGUCCACGUCCGAUCUCCACUAUGCUCUGCGGAAUCUCAAAUCGUUUCAAUAAGCGAUCGUUAGCCAAAUCGAUCACCCAAAUGCUAGGAUGUCGAAUCUGCUGGCGAUUAU .((..((...((.(((((((((.(((.(........).))))))...................(((((..........)))))............)))))).))....))..))...... ( -30.30) >DroSec_CAF1 237978 120 + 1 UGCUGGCUAGUCCACGACCGAUCUCCACUAUUCUCUGCGGAAUCUCAAAUCGUUUCAGCAAGCGAUCGUUAGCCAAAUCGAUCACCCAAAUGCUUGGUCGUCGAAUCUGCUGGCGAUUAU .(((.(((.(...((((..(((.(((.(........).)))))).....))))..)))).)))((((((((((....(((((.(((.........))).)))))....)))))))))).. ( -34.30) >DroSim_CAF1 256270 120 + 1 UGCUGGCUAGUCCACGUCCGAUCUCCACUAUUCUCAGCGGAAUCUCAAAUCGUUUCAGCAAGCGAUCGUUUGCCAAAUCGAUCACCCAAAUGCUUGGUCGUCGAAUCUGCUGGCGAUUAU .((..((...((.(((.(((((.(((.((......)).))))))....((((.((..((((((....))))))..)).)))).............)).))).))....))..))...... ( -33.40) >DroEre_CAF1 258045 120 + 1 UGCUGGCCAGUCCACGUCCGAUCUCUACUAUGCUUUGUGGGAUCUCAAAUCGUUUCAGUAAGCGGUCGGUAACCAAAUCGAUCACCCAAAUACUUGGACGCCGGAUUUGUUGGCGAUUAU .((..((.(((((.(((((((..........((((..((..((........))..))..))))(((((((......)))))))..........)))))))..))))).))..))...... ( -39.70) >DroYak_CAF1 251174 120 + 1 UGCUGGCCAGUCCACGUCCGAUCUCCACUAUGCUCUGUGGGAUCUCAAAUCGUUUCAGUAAGCGAUCGUUAGCCAAAUCGAUCACCCAAAUACUUGGACGCCGGAUUUGUUGGCGGUUAU .((..((.(((((.(((((((((.((((........))))))))...................(((((..........)))))............)))))..))))).))..))...... ( -39.60) >consensus UGCUGGCUAGUCCACGUCCGAUCUCCACUAUGCUCUGCGGAAUCUCAAAUCGUUUCAGUAAGCGAUCGUUAGCCAAAUCGAUCACCCAAAUGCUUGGACGUCGAAUCUGCUGGCGAUUAU .((..((...((.(((((((((.(((.(........).)))))).......((((....))))(((((..........)))))............)))))).))....))..))...... (-28.24 = -27.40 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:38 2006