Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,253,822 – 1,253,921 |
Length | 99 |
Max. P | 0.788631 |
Location | 1,253,822 – 1,253,921 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 93.40 |
Mean single sequence MFE | -20.90 |
Consensus MFE | -16.75 |
Energy contribution | -16.53 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.04 |
Mean z-score | -2.79 |
Structure conservation index | 0.80 |
SVM decision value | 0.58 |
SVM RNA-class probability | 0.788631 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1253822 99 - 27905053 --AUAAAAUAAAACGAUGUCAAACAAUUUUCAGCUGAAUGUGGCUUCAUUACGUUCAGUACAAAUAAACUGAUUUUGCAUAGCAUUUAUGUAAAUGACAAC --..............(((((...........(((((((((((.....)))))))))))..............(((((((((...)))))))))))))).. ( -21.40) >DroSec_CAF1 29034 101 - 1 AAAUAAAAUAAAACGAUGUCAACCAAUUUUCAACCGAAUGUGGCCUCAUUACGUUCAGUACCAAUAAACUGAUUUUGCAUAGCUUUUAUGUAAAUGACAUC ..............(((((((.(((...(((....)))..)))...........(((((........))))).(((((((((...)))))))))))))))) ( -20.30) >DroSim_CAF1 25255 101 - 1 AAAUAAAAUAAAACGAUGUCAACCAGUUUUCAACCGAAUGUGGCCUCAUUACGUUCAGUACCAAUAAACUGAUUUUGCAUAGCUUUUAUGUAAAUGACAAC ................(((((..((((((...((.((((((((.....)))))))).))......))))))..(((((((((...)))))))))))))).. ( -21.00) >consensus AAAUAAAAUAAAACGAUGUCAACCAAUUUUCAACCGAAUGUGGCCUCAUUACGUUCAGUACCAAUAAACUGAUUUUGCAUAGCUUUUAUGUAAAUGACAAC ................(((((...........((.((((((((.....)))))))).))..............(((((((((...)))))))))))))).. (-16.75 = -16.53 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:33 2006