Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,796,467 – 8,796,560 |
Length | 93 |
Max. P | 0.540980 |
Location | 8,796,467 – 8,796,560 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 77.35 |
Mean single sequence MFE | -32.39 |
Consensus MFE | -22.91 |
Energy contribution | -22.63 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.40 |
Mean z-score | -0.97 |
Structure conservation index | 0.71 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540980 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8796467 93 - 27905053 CAUUUCUUAAC---------CA---AUUUCAGGCGACGGCGGCGUGUUGGCCGUAUUUUGGCCAUGUGAAACCGAGGCGGACUGCACAGCUGACGGUACUAGCUG ...........---------..---......(((.((.(((((....((((((.....))))))((((...(((...)))....)))))))).).))....))). ( -26.30) >DroVir_CAF1 267941 92 - 1 CA-UAUUUAAU---------UG---AUUGCAGGCGACGGCGGUGCAUUGGCUGUAUUUUGGCCAUGUGAAAGCGAUGCGGACUGCACAGCUGAUGGCUCUAGCUG ..-........---------..---...((((((.(((((.(((((.((((((.....))))))(((....)))........))))).)))).).)).)).)).. ( -27.30) >DroPse_CAF1 246856 105 - 1 CAUUUUUAAACUGCAUGAUUCAAUCGUUGCAGGCGAAGGAGGCGUCUCGGCCGUUUUUUGGCCAUGUGAAAGCGAGGCGGACUGCACAGCUGACGGCUCCAGCUG ..........(((((((((...)))).))))).....(.((.(((((((((((.....)))))..((....))))))))..)).).((((((.......)))))) ( -38.50) >DroWil_CAF1 267689 91 - 1 --UAUUCUAAU---------CA---UUUGUAGGCGACGGCGGCGUUUUGGCCGUCUUUUGGCCAUGUGAAAGUCAAGAAGACUGCACAGCUGACGGCUCCAUUUG --.........---------((---..((.((.((.((((.......((((((.....))))))((((..((((.....)))).)))))))).)).)).))..)) ( -29.00) >DroAna_CAF1 206345 91 - 1 --UUUUUGUAU---------AA---AUUGCAGGCGACGGCGGCGCGUUGGCUGUUUUUUGGCCAUGUGAAAGCGAGGCAGACUGCACAGCUGACGGCUCGAGCUG --..((((((.---------..---..))))))...(((((((.(((..(((((......(((.(((....))).))).......)))))..))))))...)))) ( -32.82) >DroPer_CAF1 241671 105 - 1 CAUUUUUCAACUGCAUGAUUCAAUCGUUGCAGGCGAAGGAGGCGUCUCGGCCGUUUUUUGGCCAUGUGAAAGCGAGGCGGACUGCACAGCUGACGGCUCCAGCUG .....(((..(((((((((...)))).)))))..)))(.((.(((((((((((.....)))))..((....))))))))..)).).((((((.......)))))) ( -40.40) >consensus CAUUUUUUAAC_________CA___AUUGCAGGCGACGGCGGCGUCUUGGCCGUUUUUUGGCCAUGUGAAAGCGAGGCGGACUGCACAGCUGACGGCUCCAGCUG ...........................(((((((.......))((((((((((.....)))))..((....)))))))...)))))((((((.......)))))) (-22.91 = -22.63 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:32 2006