Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,780,851 – 8,780,941 |
Length | 90 |
Max. P | 0.542201 |
Location | 8,780,851 – 8,780,941 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.92 |
Mean single sequence MFE | -22.04 |
Consensus MFE | -14.48 |
Energy contribution | -14.37 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.18 |
Mean z-score | -1.11 |
Structure conservation index | 0.66 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.542201 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8780851 90 - 27905053 GUUGAUGUGACA---GC---------GCCGCGCACUUUGUCAAUG-----GUGU---CUGUGAUAAAGUGUUUUAAAUUCCAAAUGCAUUCAACGUUAAAUGCGAAAAAG---------- ((((((((.(((---((---------((((.((.....))...))-----))).---)))).)))..((((((........))))))..)))))................---------- ( -19.40) >DroVir_CAF1 251149 107 - 1 UUUGAUGUGUCAUCAGCGCUCCUUGCGCCGCGCACUUUGUCAACGUGCCUGUGC---CUGUGAUAAAGUGCUUUAAACUUAAAAUGCAUUCAACGUUAAAUGCAAAAAAG---------- ..(((((...)))))((((.....))))...(((((((((((.((.((....))---.))))))))))))).............((((((........))))))......---------- ( -31.20) >DroGri_CAF1 208608 87 - 1 UUUGAUGCAACAUCAGC--------------UCACUUUGUCAAUG------UGC---CUGUGAUAAAGUGAUUUAAACUCAAAACGCAUUCAACGUUAAAUGCAAAAAAG---------- .((((((...)))))).--------------(((((((((((...------...---...)))))))))))..............(((((........))))).......---------- ( -18.50) >DroWil_CAF1 248090 93 - 1 GUUGAUGUGACA---GC---------GCCGCGCACUUUGUCAAUC-----CUGUGCCCUCUGAUAAAGUGUUUUAAAUUCCAAAUGCAUUCAACGUUAAAUGCGAAAAAG---------- (((((.(((.((---((---------...))(((((((((((...-----..........))))))))))).............))))))))))................---------- ( -18.12) >DroMoj_CAF1 310377 102 - 1 UUUGAUGUGACAUCAGC---------GACGCGCACUUUGUCAAUU------CGU---CCGUGAUAAAGUGCUUUAAACUCGAAAUGCAUUCAACUUUAAACUCGACUCGACUCGAGCUGC .((((.(((.(((...(---------((...(((((((((((...------...---...))))))))))).......)))..)))))))))).......(((((......))))).... ( -23.80) >DroPer_CAF1 220247 91 - 1 GUUGAUGUGACA---GC---------GCCGCGCACUUUGUCAAUGG----GUGU---CUGUGAUAAAGUGUUUUAAAUUCCAAAUGCAUUCAACGCUAAAUGCAAAAAAG---------- (((((.(((.((---((---------...))(((((((((((.(((----....---)))))))))))))).............))))))))))((.....)).......---------- ( -21.20) >consensus GUUGAUGUGACA___GC_________GCCGCGCACUUUGUCAAUG_____GUGU___CUGUGAUAAAGUGUUUUAAACUCCAAAUGCAUUCAACGUUAAAUGCAAAAAAG__________ ...............................(((((((((((..................))))))))))).............((((((........))))))................ (-14.48 = -14.37 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:28 2006