Locus 3285

Sequence ID 3R_DroMel_CAF1
Location 8,776,691 – 8,776,784
Length 93
Max. P 0.865900
window5299

overview

Window 9

Location 8,776,691 – 8,776,784
Length 93
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 87.14
Mean single sequence MFE -26.75
Consensus MFE -22.02
Energy contribution -22.58
Covariance contribution 0.56
Combinations/Pair 1.06
Mean z-score -2.48
Structure conservation index 0.82
SVM decision value 0.85
SVM RNA-class probability 0.865900
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8776691 93 + 27905053
GGCAGCUGCG--UAGCGGAAGCAGUCGCUCUACUAACUUGAGCGGAAAUUGCAGCGCUUAAAUGCCAAACAUAAAGUACACUUUGAACAUGCACA
.(((((((((--..((....))..((((((.........))))))....))))))((......))......(((((....)))))....)))... ( -28.50)
>DroPse_CAF1 220860 82 + 1
GGCAGCUGCG--UGGCGGAAGCAGUCGCUCGACUAACUUGAGCGGAAAUUGCAGCGCUUAAAUGCCAAACAUAAAGUACAC-----------ACA
((((((((((--..((....))..((((((((.....))))))))....)))))).......))))...............-----------... ( -27.81)
>DroSim_CAF1 214482 93 + 1
GGCAGCUGCG--UAGCGGAAGCAGUCGCUCUACUAACUUGAGCGGAAAUUGCAGCGCUUAAAUGCCAAACAUAAAGUACACUUUGAACAUGCACA
.(((((((((--..((....))..((((((.........))))))....))))))((......))......(((((....)))))....)))... ( -28.50)
>DroWil_CAF1 243436 92 + 1
GGCAGUUGCAUAUAGCGGAAGCAGUCACUCUACUAACUUGAGCGGAAAUUGCAGCGCUUAAAUGCCAAACAUAAAGUACACUUUACACA-GCA--
((((((((((....((....))..((.(((.........))).))....)))))).......)))).....(((((....)))))....-...-- ( -21.01)
>DroAna_CAF1 186330 93 + 1
GGCAGCAGCG--UAGCGGAAGCAGUCGCUCUACUAACUUUAGCGGAAAUUGCAACGCUUAAAUGCCAAACAUAAAGUACAGUUUACACAUGUGCA
((((..((((--(.((....))....((((..(((....)))..))....)).)))))....)))).........(((((((....)).))))). ( -26.20)
>DroPer_CAF1 216061 82 + 1
GGCAGCUGCA--UGGCGGAAGCAGUCGCUCGACUAACUUGAGCGGAAAUUGCAGCGCUUAAAUGCCAAACAUAAAGUACAC-----------ACA
((((((((((--..((....))..((((((((.....))))))))....)))))).......))))...............-----------... ( -28.51)
>consensus
GGCAGCUGCG__UAGCGGAAGCAGUCGCUCUACUAACUUGAGCGGAAAUUGCAGCGCUUAAAUGCCAAACAUAAAGUACACUUU__ACA_GCACA
(((((((((.....((....))..((((((.........)))))).....))))).......))))............................. (-22.02 = -22.58 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:27 2006