Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,775,327 – 8,775,417 |
Length | 90 |
Max. P | 0.695016 |
Location | 8,775,327 – 8,775,417 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 97.78 |
Mean single sequence MFE | -25.60 |
Consensus MFE | -24.36 |
Energy contribution | -24.76 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.23 |
Structure conservation index | 0.95 |
SVM decision value | 0.34 |
SVM RNA-class probability | 0.695016 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8775327 90 - 27905053 GGCCAUUGCCAUUCUCAUCAUCGUCAGCGUGAUCAUCACCAGAGCUGGCAUUUUCUUUGCCGUCAGUGCAAUUGUUUCGGUGGCAACCAU ((...(((((............(((((((((.....)))....)))))).........((((.((((...))))...))))))))))).. ( -24.10) >DroSec_CAF1 195797 90 - 1 GGCCAUUGCCAUUCUCAUCAUCGUCAGCGUGAUCAUCACCAGUGCUGGCAUUUUCUUUGCCGUCAGUGCAAUUGUGUCGGUGGCAACCAU ((...((((((((..(((....(((((((((.....)))....)))))).......(((((....).))))..)))..)))))))))).. ( -26.20) >DroSim_CAF1 213125 90 - 1 GGCCAUUGCCAUUCUCAUCAUCGUCAGCGUGAUCAUCACCAGAGCUGGCAUUUUCUUUGCCGUCAGUGCAAUUGUGUCGGUGGCAACCAU ((...((((((((..(((....(((((((((.....)))....)))))).......(((((....).))))..)))..)))))))))).. ( -26.20) >DroEre_CAF1 213775 90 - 1 GGCCAUUGCCAUUCUCAUCAUCGUCAGCGUGAUCAUCACCAGAGCUGGCAUUUUCUUUGCCGUCAGUGCAAUUGUGUCGGUGGCAACCAU ((...((((((((..(((....(((((((((.....)))....)))))).......(((((....).))))..)))..)))))))))).. ( -26.20) >DroYak_CAF1 206627 90 - 1 GGCCAUUGCCAUUCUCAUCAUCGUCAGCGUGAUCAUCACCAGAGCUGGCAUUUUCUUUGCCGACAGUGCAAUUGUGUCCGUGGCAAGCAU .((..(((((((...((((((.(((((((((.....)))....)))((((.......))))))).))).....)))...))))))))).. ( -25.30) >consensus GGCCAUUGCCAUUCUCAUCAUCGUCAGCGUGAUCAUCACCAGAGCUGGCAUUUUCUUUGCCGUCAGUGCAAUUGUGUCGGUGGCAACCAU .(((((((.(((..........(((((((((.....)))....)))))).......(((((....).))))..))).)))))))...... (-24.36 = -24.76 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:26 2006