Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,772,176 – 8,772,266 |
Length | 90 |
Max. P | 0.996156 |
Location | 8,772,176 – 8,772,266 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 69.65 |
Mean single sequence MFE | -13.77 |
Consensus MFE | -8.35 |
Energy contribution | -9.38 |
Covariance contribution | 1.03 |
Combinations/Pair | 1.07 |
Mean z-score | -2.60 |
Structure conservation index | 0.61 |
SVM decision value | 2.66 |
SVM RNA-class probability | 0.996156 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8772176 90 + 27905053 CAAUAAAACUCAUAAAAUAUGUUUGCCAUCAGACUCUAACACAUUCAACAAACCACAGUGGUGGCAAAAAUAU-------UGGAAAUAU--UGGAAACG (((((....((....(((((.((((((((((...........................)))))))))).))))-------).))..)))--))...... ( -15.93) >DroSec_CAF1 192699 81 + 1 CAAUAAAACUCAUAAAAUAUGUUUGCCAUCAGACUCUAACACAUUCAACAAAACACAGUGGUGGCAAAAAUAU------------------UGGACACC .........((....(((((.((((((((((...........................)))))))))).))))------------------).)).... ( -13.73) >DroSim_CAF1 210036 75 + 1 CAAUAAAACUCAUAAAAUAUGUUUGCCAUCAGA------CACAUUCAACAAAACACAGUGGUGGCAAAAAUAU------------------UGAAAACA ...............(((((.((((((((((..------...................)))))))))).))))------------------)....... ( -13.80) >DroEre_CAF1 210635 68 + 1 CAAUAAAACUCAUAAAAUAUGUUUGCCAUCAGAC------------U-CACAGCACAGUGGUGGCAAAAAUAU------------------UGGCAACA ...............(((((.(((((((((..((------------(-........)))))))))))).))))------------------)(....). ( -15.30) >DroYak_CAF1 203516 69 + 1 CAAUAAAACUCAUAAAAUAUGUUUGCCAUCAGAC------------AACACAGCACAGUGGUGGCAGAAAUAU------------------UGGAAACC ...............(((((.((((((((((...------------............)))))))))).))))------------------)(....). ( -14.86) >DroAna_CAF1 181918 87 + 1 CAAUAAAACUCAUAAAAUAUGUUUGCCAUCAGACUGCAAGGCAUACA------------CUCGGAUAAAAAAUGAUCUAUAAGAAUCAUGUUAAAUAAA ...................(((.((((............)))).)))------------......(((...((((((.....).))))).)))...... ( -9.00) >consensus CAAUAAAACUCAUAAAAUAUGUUUGCCAUCAGAC_____CACAUUCAACAAAACACAGUGGUGGCAAAAAUAU__________________UGGAAACA ................((((.((((((((((...........................)))))))))).)))).......................... ( -8.35 = -9.38 + 1.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:25 2006