Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,771,133 – 8,771,226 |
Length | 93 |
Max. P | 0.984265 |
Location | 8,771,133 – 8,771,226 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 90.21 |
Mean single sequence MFE | -33.63 |
Consensus MFE | -28.75 |
Energy contribution | -30.33 |
Covariance contribution | 1.58 |
Combinations/Pair | 1.04 |
Mean z-score | -2.89 |
Structure conservation index | 0.85 |
SVM decision value | 1.97 |
SVM RNA-class probability | 0.984265 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8771133 93 + 27905053 CUUAAGUUGGCUGCAACGAGUGUUUUGCUUAGCUGCUUUGUGCACUCGGAUAAGUGCAAGGAGCAGCCGCCUGCCUGCUCCUUUUCCAAAUAC----- ....(((.(((.((...((((.....)))).(((((((..((((((......))))))..))))))).))..))).)))..............----- ( -32.70) >DroSec_CAF1 191648 93 + 1 CUUAAGUUGGCUGCAACGAGUGUUUUGCUUAGCUGCUUUGUGCACUCGGAUAAGUGCAAGGAGCAGCCGCCUGCCAGCUCCUUUUCCAAAUAC----- ....(((((((.((...((((.....)))).(((((((..((((((......))))))..))))))).))..)))))))..............----- ( -36.50) >DroSim_CAF1 208991 93 + 1 CUUAAGUUGGCUGCAACGAGUGUUUUGCUUAGCUGCUUUGUGCACUCGGAUAAGUGCAAGGAGCAGCCGCCUGCCAGCUCCUUUUCCAAAUAC----- ....(((((((.((...((((.....)))).(((((((..((((((......))))))..))))))).))..)))))))..............----- ( -36.50) >DroEre_CAF1 209572 93 + 1 CUUAAGUUGGCUGCAACGAGUGUUUUGCUUAGCUGCUUUGUGCACUUGGAUAAGUGCAAGGAGCAGCCGCCUGCCGGCUCCUUUUCCAAAUAC----- ....(((((((.((...((((.....)))).(((((((..(((((((....)))))))..))))))).))..)))))))..............----- ( -36.40) >DroYak_CAF1 202537 93 + 1 CUUAAGUUGGCUGCAACGAGUGUUUUGCUUAGCUGCUUUGUGCACUCGGAUAAGUGCAAGGAGCAGCCGCCUGCCUGCUCCUUUUCCAAAUAC----- ....(((.(((.((...((((.....)))).(((((((..((((((......))))))..))))))).))..))).)))..............----- ( -32.70) >DroAna_CAF1 180953 92 + 1 CUUAAGUUGGCUGCAACGAGUGUUUUGCUUAGUUGCUUUGUGCACUUGGAUAAGUGCAGGGAUC------CUUCCAUCUCCUGCCCCUGCCGCUGUGA ........(((.(((.(((((((...((......)).....))))))).......((((((((.------.....))).)))))...))).))).... ( -27.00) >consensus CUUAAGUUGGCUGCAACGAGUGUUUUGCUUAGCUGCUUUGUGCACUCGGAUAAGUGCAAGGAGCAGCCGCCUGCCAGCUCCUUUUCCAAAUAC_____ ....(((((((.((...((((.....)))).(((((((..((((((......))))))..))))))).))..)))))))................... (-28.75 = -30.33 + 1.58)
Location | 8,771,133 – 8,771,226 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 90.21 |
Mean single sequence MFE | -30.81 |
Consensus MFE | -25.00 |
Energy contribution | -25.78 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.04 |
Mean z-score | -2.51 |
Structure conservation index | 0.81 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809924 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8771133 93 - 27905053 -----GUAUUUGGAAAAGGAGCAGGCAGGCGGCUGCUCCUUGCACUUAUCCGAGUGCACAAAGCAGCUAAGCAAAACACUCGUUGCAGCCAACUUAAG -----....((((..(((((((((.(....).)))))))))((((((....)))))).....(((((..............)))))..))))...... ( -32.24) >DroSec_CAF1 191648 93 - 1 -----GUAUUUGGAAAAGGAGCUGGCAGGCGGCUGCUCCUUGCACUUAUCCGAGUGCACAAAGCAGCUAAGCAAAACACUCGUUGCAGCCAACUUAAG -----.............(((.((((....(((((((...(((((((....)))))))...)))))))..((((........)))).)))).)))... ( -32.20) >DroSim_CAF1 208991 93 - 1 -----GUAUUUGGAAAAGGAGCUGGCAGGCGGCUGCUCCUUGCACUUAUCCGAGUGCACAAAGCAGCUAAGCAAAACACUCGUUGCAGCCAACUUAAG -----.............(((.((((....(((((((...(((((((....)))))))...)))))))..((((........)))).)))).)))... ( -32.20) >DroEre_CAF1 209572 93 - 1 -----GUAUUUGGAAAAGGAGCCGGCAGGCGGCUGCUCCUUGCACUUAUCCAAGUGCACAAAGCAGCUAAGCAAAACACUCGUUGCAGCCAACUUAAG -----....((((.......(((....)))(((((((...(((((((....)))))))...)))))))..((((........))))..))))...... ( -30.80) >DroYak_CAF1 202537 93 - 1 -----GUAUUUGGAAAAGGAGCAGGCAGGCGGCUGCUCCUUGCACUUAUCCGAGUGCACAAAGCAGCUAAGCAAAACACUCGUUGCAGCCAACUUAAG -----....((((..(((((((((.(....).)))))))))((((((....)))))).....(((((..............)))))..))))...... ( -32.24) >DroAna_CAF1 180953 92 - 1 UCACAGCGGCAGGGGCAGGAGAUGGAAG------GAUCCCUGCACUUAUCCAAGUGCACAAAGCAACUAAGCAAAACACUCGUUGCAGCCAACUUAAG .......(((((..(((((.(((.....------.))))))((((((....)))))).....))..))..((((........)))).)))........ ( -25.20) >consensus _____GUAUUUGGAAAAGGAGCUGGCAGGCGGCUGCUCCUUGCACUUAUCCGAGUGCACAAAGCAGCUAAGCAAAACACUCGUUGCAGCCAACUUAAG ..................(((..(((....(((((((...(((((((....)))))))...)))))))..((((........)))).)))..)))... (-25.00 = -25.78 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:24 2006