Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,768,619 – 8,768,710 |
Length | 91 |
Max. P | 0.731696 |
Location | 8,768,619 – 8,768,710 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | reverse |
Mean pairwise identity | 82.03 |
Mean single sequence MFE | -19.18 |
Consensus MFE | -13.00 |
Energy contribution | -13.48 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.06 |
Mean z-score | -1.85 |
Structure conservation index | 0.68 |
SVM decision value | 0.43 |
SVM RNA-class probability | 0.731696 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8768619 91 - 27905053 GUUGGAUGUGUGCUAUCAAAGGCGGUGGCGGAAACUACAGUGGACACUGGAUAAUGUGGAAGCAAAUCAAAAAUGAAUCAAUGUUUAUGAA ......((((.((((((......))))))(....)))))(((((((.(((....(((....)))..(((....))).))).)))))))... ( -17.10) >DroSec_CAF1 189394 78 - 1 GUUGGAUGUGUGCUAUCAAAGGCGGUGGCGGAAGGUACAGUGGACACUGGAUACAGUGGAAGCAAAUCAAGAAUAAAA------------- ....(((...((((.((....((.(((.(....).))).))...(((((....))))))))))).)))..........------------- ( -21.10) >DroSim_CAF1 206790 78 - 1 GUUGGAUGUGUGCUAUCAAAGGCGGUGGCGGAAGGUACAGUGGACACUGGAUAUAGUGGUAGCAAAUCAAAAAUAAAA------------- ....(((...((((((.....((.(((.(....).))).))...(((((....))))))))))).)))..........------------- ( -20.00) >DroEre_CAF1 206259 91 - 1 GUUGGAUGUGUGCUAUCAAAGGCGGAGGCGGAAGGUACAGUGGACACUGGACGCAGUGGAAUUAAAUCAAAAACAAAUCAAUGUUUAUGAA ........((((((.((....((....)).)).)))))).....(((((....)))))........(((.(((((......))))).))). ( -18.80) >DroYak_CAF1 199127 85 - 1 GUUGGAUGUGUGCUAUCAAAGGCGGUGGCGGAAGGUACAGUGGACACUGGACACAGUGGAAUUAAAUGGAAAAUAAGUCAAUGU------G (((((...(((.((((.....((.(((.(....).))).))...(((((....))))).......))))...)))..)))))..------. ( -18.90) >consensus GUUGGAUGUGUGCUAUCAAAGGCGGUGGCGGAAGGUACAGUGGACACUGGAUACAGUGGAAGCAAAUCAAAAAUAAAUCAAUGU_______ .(((....(.(((((((......))))))).).....)))....(((((....)))))................................. (-13.00 = -13.48 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:22 2006