Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,253,263 – 1,253,374 |
Length | 111 |
Max. P | 0.763081 |
Location | 1,253,263 – 1,253,374 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 86.49 |
Mean single sequence MFE | -30.00 |
Consensus MFE | -23.21 |
Energy contribution | -24.53 |
Covariance contribution | 1.31 |
Combinations/Pair | 1.09 |
Mean z-score | -1.76 |
Structure conservation index | 0.77 |
SVM decision value | 0.51 |
SVM RNA-class probability | 0.763081 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1253263 111 + 27905053 UGAGCUGGCAGAGUUAUGUGUCCACAUGACUGUCGAAUCGAUAUUCUUCACAUAUGUAUAUAUGUAUGUACAUCAUGUUGUGUGGAUUUAC-CCACGGAAGUGGAUUAAUUU ......((((..(((((((....)))))))))))(((((.((((.....((((((((((((....)))))))).)))).)))).)))))..-((((....))))........ ( -32.90) >DroSec_CAF1 28511 110 + 1 GGAGCUGGCAUAGUUAUGUGUCCACAUGGCUGUCGAAUCGAUAUUCUUCACAUAUGUAUA-GUAUAUGUACAUCCUGUUGUGUGGAUUUAC-CCACGGAAGUGGAUUAAUUU .......((((....))))(((((((..(((((((...)))))..........(((((((-.....)))))))...))..)))))))....-((((....))))........ ( -30.80) >DroSim_CAF1 24300 110 + 1 GGAGCUGGCAGAGUUAUGUGUCCACAUGGCUGUCGAAUCGAUAUUCUUCACAUAUGUAUA-GUAUAUGUACAUCCUGUUGUGUGGAUUUAC-CCACGGAAGUGGAUUAAUUU .((..((((((...(((((....))))).))))))..)).......((((((((((((((-.....)))))))......))))))).....-((((....))))........ ( -30.60) >DroEre_CAF1 27918 97 + 1 GGUGCUGGCAAAGUUAUGUGUCCACAUGGCUGUUGAAUCGAUUUUCUCCACAUAAGUA---------------CCAGUUGCGCGGAUUUACACCACGGAAGUGGAUUAAUUU ((((((.....((((((((....))))))))(..(((......)))..).....))))---------------)).................((((....))))........ ( -25.70) >consensus GGAGCUGGCAGAGUUAUGUGUCCACAUGGCUGUCGAAUCGAUAUUCUUCACAUAUGUAUA_GUAUAUGUACAUCCUGUUGUGUGGAUUUAC_CCACGGAAGUGGAUUAAUUU .((..(((((..(((((((....))))))))))))..)).......((((((((((((((......))))))......))))))))......((((....))))........ (-23.21 = -24.53 + 1.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:32 2006