Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,757,680 – 8,757,774 |
Length | 94 |
Max. P | 0.971897 |
Location | 8,757,680 – 8,757,774 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 77.44 |
Mean single sequence MFE | -19.78 |
Consensus MFE | -15.62 |
Energy contribution | -15.62 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.12 |
Mean z-score | -1.96 |
Structure conservation index | 0.79 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971897 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8757680 94 + 27905053 CAA-AAACUAUCUUUGUGGGCGUGAUGCAAAUGCAGAACAACAUUGUGUUCACUGAGAUAAAAACUGAGAUAUUAAAACAUUGCUGCUGGUAAAA ...-....((((((.(((((((..(((..............)))..))))))).))))))....................((((.....)))).. ( -18.84) >DroSec_CAF1 178773 72 + 1 CAA-AAACUAUCUUUGUGGGCGUGAUGCAAAUGCAGAACAACAUCGGGUUCACUGAGAUUAAAACU----------------------GCUAAAA ...-.....(((((.((((((.(((((..............))))).)))))).))))).......----------------------....... ( -16.64) >DroSim_CAF1 196044 72 + 1 CAA-AAACUAUCUUUGUGGGCGUGAUGCAAAUGCAGAACAACAUCGGGUUCACUGAGAUAAAAACU----------------------GCUAAGA ...-....((((((.((((((.(((((..............))))).)))))).))))))......----------------------....... ( -18.54) >DroEre_CAF1 194993 94 + 1 AAA-AAACUAUCUUUGUGGGCGUGAUGCAAAUGCAGAACAACAUUGGGUUCACUGAGAUAAAUACUGAAAAAUUCAAGCAUUGCUGGUGCUGCAA ...-....((((((.((((((((..(((....)))..))..(....))))))).))))))................(((((.....))))).... ( -20.90) >DroYak_CAF1 187889 95 + 1 AAAAAAACUAUCUUUGUGGGCGUGAUGCAAAUGCAGAACAACAUUGGGUUCACUCAGGUAAAUUCUGAGAAAUUCAAACAUUGCUGGCUCUGAAA ..........((...((.(((((..(((....)))..))....(((((((..((((((.....)))))).))))))).....))).))...)).. ( -24.00) >consensus CAA_AAACUAUCUUUGUGGGCGUGAUGCAAAUGCAGAACAACAUUGGGUUCACUGAGAUAAAAACUGA_A_AUU_AA_CAUUGCUG__GCUAAAA ........((((((.((((((.(((((..............))))).)))))).))))))................................... (-15.62 = -15.62 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:19 2006