Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,743,685 – 8,743,789 |
Length | 104 |
Max. P | 0.913004 |
Location | 8,743,685 – 8,743,789 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 81.18 |
Mean single sequence MFE | -24.47 |
Consensus MFE | -14.71 |
Energy contribution | -14.35 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.17 |
Mean z-score | -2.90 |
Structure conservation index | 0.60 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913004 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8743685 104 - 27905053 GGCU-UUUUUUUC-GCUUUCAUUCUGUUUGGCCACUGCAUUUGUUUAUUGUCAUUGUCAGCGUUAUUUAAACGUUGACAGUUUCA-AAAAUACACCAAGCUCCAGCA ....-........-(((........((((((..........(((...(((..((((((((((((.....))))))))))))..))-)....)))))))))...))). ( -23.50) >DroPse_CAF1 186945 106 - 1 UUCUAUUUUUUGCUGGCUCCAUUCUGUUUGGCCACUGCAUUUGUUUAUUGUCAUUGUCAGCGUUAUUUAAACGUUGACAGUUUCC-AAAAUUUCUCAUGGUCGAACA .........................(((((((((.((.....((((...(..((((((((((((.....))))))))))))..).-.))))....))))))))))). ( -26.80) >DroSec_CAF1 170257 105 - 1 GGCUAUUUUUUUC-GCUUUCAUUCUGUUUGGCCACUGCAUUUGUUUAUUGUCAUUGUCAGCGUUAUUUAAACGUUGACAGUUUCA-AAUAUACACUGAGCUCCAGCA (((((........-..............)))))...((....((((((((..((((((((((((.....))))))))))))..))-)........)))))....)). ( -24.65) >DroWil_CAF1 211835 102 - 1 GGUUUUUUGUUUC-UCUUUCGUUCUGCUUAGCCAUUGCAUUUGUUUAUUGUCAUUGUCAACGUUAUUUAAACGUUGACAGUUUUA-CAAUUUC-GAUUGU--UAGCA ((((....((...-.(....)....))..))))...(((.(((...(((((.((((((((((((.....))))))))))))...)-))))..)-)).)))--..... ( -23.30) >DroAna_CAF1 159978 103 - 1 GGUUUCUCUUUUU-G---UUAUUUUUUUUUGCCACUGCAUUUGUUUAUUGUCAUUGUCAGCGUUAUUUAAACGUUGACAGUUUUAAAAAAUUCACCGGGGUCCAACA ((..((((.....-.---...........(((....)))...((((.(((..((((((((((((.....))))))))))))..))).)))).....)))).)).... ( -21.80) >DroPer_CAF1 182000 106 - 1 UUCUAUUUUUUGCUGGCUCCAUUCUGUUUGGCCACUGCAUUUGUUUAUUGUCAUUGUCAGCGUUAUUUAAACGUUGACAGUUUCC-AAAAUUUCCCAUGGUCGAACA .........................(((((((((.((.....((((...(..((((((((((((.....))))))))))))..).-.))))....))))))))))). ( -26.80) >consensus GGCUAUUUUUUUC_GCUUUCAUUCUGUUUGGCCACUGCAUUUGUUUAUUGUCAUUGUCAGCGUUAUUUAAACGUUGACAGUUUCA_AAAAUUCACCAUGGUCCAACA ........................((((..((....))..............((((((((((((.....))))))))))))......................)))) (-14.71 = -14.35 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:17 2006