Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,737,782 – 8,737,875 |
Length | 93 |
Max. P | 0.802369 |
Location | 8,737,782 – 8,737,875 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 79.55 |
Mean single sequence MFE | -21.03 |
Consensus MFE | -15.75 |
Energy contribution | -16.08 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.12 |
Mean z-score | -1.47 |
Structure conservation index | 0.75 |
SVM decision value | 0.62 |
SVM RNA-class probability | 0.802369 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8737782 93 + 27905053 AGGCCAUUCUGGAGAACAAGCAAAUGAAACUCAAGUGCAUGUAGCUCUAGCCGGGCCAAGUGGUGCAAU----AAAAAAAA-----CAAAUACAUUCGACUG .((((...((((((.(((.(((..((.....))..))).)))..))))))...))))............----........-----................ ( -24.10) >DroPse_CAF1 180869 84 + 1 UGGCC---GUGGAGAACAAGCAAAUGAAACUCAAGUGCAUGUAGCCUGGGCCUGGCCAAGUGGCACAGA----AAAACGAACAGUGAAAAA----------- .((((---..((...(((.(((..((.....))..))).)))..))..))))(((((....))).))..----..................----------- ( -22.10) >DroSec_CAF1 164350 95 + 1 AGGCCAUUCUGGAGAACAAGCAAAUGAAACUCAAGUGCAUGUAGCGCUAGCCGGGCCAAGUGGUGCAAU----AAAAA-AA--AAGAAAAUACAUUCGACUG .((((...((((.(.(((.(((..((.....))..))).)))..).))))...))))............----.....-..--..(((......)))..... ( -19.80) >DroSim_CAF1 181538 96 + 1 AGGCCAUUCUGGAGAACAAGCAAAUGAAACUCAAGUGCAUGUAGCGCUAGCCGGGCCAAGUGGUGCAAU----AAAAAAAA--AAGAAAAUACAUUCGACUG .((((...((((.(.(((.(((..((.....))..))).)))..).))))...))))............----........--..(((......)))..... ( -19.80) >DroYak_CAF1 173036 96 + 1 AGGCCAUUCUGGAGAACAAGCAAAUGAAACUCAAGUGCAUGUAGCGCUAGCCGGGCCAAGUGGUGCAAU----AAAAAAAA--AUUAAUAUACAUUCGACGG .((((...((((.(.(((.(((..((.....))..))).)))..).))))...))))............----........--................... ( -19.70) >DroAna_CAF1 153892 91 + 1 GGGGCAUUCUGGCGAACAAGCAAAUGAAACUCAAGUGCAUGUAGCGAUGGCCUGGCCAAGUGGCGUAGUCCACAAAAAAAAUAAAGAAACU----------- ......((((.((..(((.(((..((.....))..))).))).))(.(((.((((((....))).))).))))...........))))...----------- ( -20.70) >consensus AGGCCAUUCUGGAGAACAAGCAAAUGAAACUCAAGUGCAUGUAGCGCUAGCCGGGCCAAGUGGUGCAAU____AAAAAAAA__AAGAAAAUACAUUCGACUG .((((...((((.(.(((.(((..((.....))..))).)))..).))))...))))............................................. (-15.75 = -16.08 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:14 2006