Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,736,521 – 8,736,612 |
Length | 91 |
Max. P | 0.928693 |
Location | 8,736,521 – 8,736,612 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 91 |
Reading direction | forward |
Mean pairwise identity | 95.16 |
Mean single sequence MFE | -30.68 |
Consensus MFE | -27.94 |
Energy contribution | -27.50 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.12 |
Mean z-score | -1.46 |
Structure conservation index | 0.91 |
SVM decision value | 1.19 |
SVM RNA-class probability | 0.928693 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8736521 91 + 27905053 UCCGCACUGGAGCUCGUAUUCCUGGUGAGCAAUUGUAUGGCAUCGAAGCGGUUGCGCAACAAAUAGACGCCGUAAUGUCGGUGCGGUUCAA .(((((((((.(((((.........))))).....((((((.((......(((....))).....)).))))))...)))))))))..... ( -30.60) >DroSec_CAF1 163121 91 + 1 UCCGCACUGGAGCUCGUAUUCCUGGUGAGCAAUUGUAUGGCGUCGAAGCGGUUGCGUAACAAAUAGACGCCGUAAUGUCGGUGCGGUUCAA .(((((((((.(((((.........))))).....(((((((((......(((....))).....)))))))))...)))))))))..... ( -35.30) >DroSim_CAF1 180298 91 + 1 UCCGCACUGGAGCUCGUAUUCCUGGUGAGCAAUUGGAUGGCGUCGAAGCGGUUGCGUAACAAAUAGACGCCGUAAUGUCGGUGCGGUUCAA .(((((((((.(((((.........)))))......((((((((......(((....))).....))))))))....)))))))))..... ( -34.10) >DroEre_CAF1 179393 91 + 1 UCUGUACUGGAGCUCGUAUUCCGGGUGAGCAAUUGUAUGGCAUCGAAGCGGUUGCGUAAUAAAUAGACGCCGUAAUGUCGGUGCGGUUCAA ..(((.((((((......))))))....))).(((.((.(((((((.(((((..(..........)..)))))....))))))).)).))) ( -25.00) >DroYak_CAF1 171758 91 + 1 UCCGUACUGGAGCUCGUAUUUCGGGUGAGCAAUUGUAUGGCAUCGAAGCGGUUGCGUAAUAAAUAGACGCCGUAGUGUCGGUGCGGUUCAA .(((((((...(((((.....)))))..((((((((...........))))))))..........(((((....))))))))))))..... ( -28.40) >consensus UCCGCACUGGAGCUCGUAUUCCUGGUGAGCAAUUGUAUGGCAUCGAAGCGGUUGCGUAACAAAUAGACGCCGUAAUGUCGGUGCGGUUCAA .(((((((((.(((((.........))))).....((((((.((......(((....))).....)).))))))...)))))))))..... (-27.94 = -27.50 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:13 2006