Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,733,745 – 8,733,865 |
Length | 120 |
Max. P | 0.650522 |
Location | 8,733,745 – 8,733,865 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.27 |
Mean single sequence MFE | -19.83 |
Consensus MFE | -13.92 |
Energy contribution | -15.03 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.04 |
Mean z-score | -2.11 |
Structure conservation index | 0.70 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650522 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8733745 120 - 27905053 CAGAUAUAUAUGUUAUAAAAGAUUCAAGAUCACAUUCCAAGAUAUUCUUCUUAUCUGAAAUACAUUCAGAGAACUUUAAACAUUCGAUAUAUGUACAUAUCAUAAAUGAAAAAGUAGGCA ((..(((((((((....((((.(((.............((((......)))).((((((.....)))))))))))))..((((.......)))))))))).)))..))............ ( -15.60) >DroSec_CAF1 160426 113 - 1 CAAAUAUAUAUGUAAUAAAAAAUUCAAGAUCAGAAUGCAAGAUCUUGGUAUUAUCUGAAAUCCAUUCAGAGAACAUUAAACG-------UAUGUACAUAUUAUAAACGAAAAAGUAUGCC ....(((((((((..........((((((((.........)))))))).....((((((.....)))))).........)))-------))))))((((((...........)))))).. ( -21.70) >DroSim_CAF1 177587 113 - 1 CAAAUAUAUAUGUAAUAAAAAAUGCAAGAUCAGUAUGCAAGAUCUUGUUAUUAUCUGAAAUCCAUUCAGAGAACAUUAAACG-------UAUGUACAUAUUAUAAACGAAAAAGUAUGCC ....(((((((((..........((((((((.........)))))))).....((((((.....)))))).........)))-------))))))((((((...........)))))).. ( -22.20) >consensus CAAAUAUAUAUGUAAUAAAAAAUUCAAGAUCAGAAUGCAAGAUCUUGUUAUUAUCUGAAAUCCAUUCAGAGAACAUUAAACG_______UAUGUACAUAUUAUAAACGAAAAAGUAUGCC ....((((((((((.........((((((((.........)))))))).....((((((.....)))))).......................))))))).)))................ (-13.92 = -15.03 + 1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:09 2006