Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,727,106 – 8,727,202 |
Length | 96 |
Max. P | 0.754418 |
Location | 8,727,106 – 8,727,202 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 93.89 |
Mean single sequence MFE | -25.64 |
Consensus MFE | -20.68 |
Energy contribution | -20.68 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.13 |
Mean z-score | -2.49 |
Structure conservation index | 0.81 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.754418 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8727106 96 - 27905053 UGUCGAUUUGUGUUUGCAUUUUAUGCAGGCGCACUGUCGUCGCACACGCCCAUUGUUUUCGCAUUUUAUUUGCUUUGGUCCUGGGAAAAUAUUCCA .(.((((.(((((((((((...)))))))))))..)))).)...((.(.(((..((...............))..))).).))((((....)))). ( -24.96) >DroSec_CAF1 153894 96 - 1 UGUCGAUUUGUGUUUGCAUUUUAUGCAAGCGCACUGUCGUCGCACACGCCCAUUGUUUUCGCAUUUUAUUUGCUUUGGUCCUGGGAAAAUAUUCCA .(.((((.(((((((((((...)))))))))))..)))).)...((.(.(((..((...............))..))).).))((((....)))). ( -25.36) >DroSim_CAF1 171049 96 - 1 UGUCGAUUUGUGUUUGCAUUUUAUGCAAGCGCACUGUCGUCUCACACGCCCAUUGUUUUCGCAUUUUAUUUGCUUUGGUCCUGGGAAAAUAUUCCA .(.((((.(((((((((((...)))))))))))..)))).)...((.(.(((..((...............))..))).).))((((....)))). ( -24.86) >DroEre_CAF1 170133 96 - 1 UGUCGAUUUGUGUUUGCAUUUUAUGCAAGCGCACUGUCGUCGCACACACCCAUUGUUUUCGCAUUUUAUUUGCUCUGGUCCUGGGAAAAUAUUCCA .(.((((.(((((((((((...)))))))))))..)))).).......((((........(((.......)))........))))........... ( -25.59) >DroYak_CAF1 162386 96 - 1 UGUCGAUUUGUGUUUGCAUUUUAUGCAAGCGCACUGUCGUCGCACACGCCCAUUGUUUUCGCAUUUUAUUUGCUUUGGUCCUGCGAAAAUAUUCCA .(.((((.(((((((((((...)))))))))))..)))).)((....))....((((((((((..(((.......)))...))))))))))..... ( -28.10) >DroAna_CAF1 144199 92 - 1 UGUCGAUUUGUGUUUGCAUUUCAUGCUAGCGCACU-UUGUCGCACUGG--CAUUGUUUUCGCAUUUUAUUUGCUUUCGG-CUGCGAAAAUAUUCGA ....((..(((....)))..))(((((((.((...-.....)).))))--)))((((((((((........((.....)-)))))))))))..... ( -25.00) >consensus UGUCGAUUUGUGUUUGCAUUUUAUGCAAGCGCACUGUCGUCGCACACGCCCAUUGUUUUCGCAUUUUAUUUGCUUUGGUCCUGGGAAAAUAUUCCA .(.((((.(((((((((((...)))))))))))..)))).)...................(((.......)))..........((((....)))). (-20.68 = -20.68 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:06 2006