Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,726,507 – 8,726,608 |
Length | 101 |
Max. P | 0.582006 |
Location | 8,726,507 – 8,726,608 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 78.98 |
Mean single sequence MFE | -25.59 |
Consensus MFE | -16.48 |
Energy contribution | -15.90 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.22 |
Mean z-score | -1.35 |
Structure conservation index | 0.64 |
SVM decision value | 0.10 |
SVM RNA-class probability | 0.582006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8726507 101 + 27905053 GUGUGAGUGAGA-UGGCAA-----G-CGUGAUGGGGCUUCCCGCACGGCAAAGAAAAUGGCGUUAGCUGCAGCGCAUAGAAUUGCAAAUUCAAUUUCAAUUCAAUUGA ...(((((((((-(.....-----.-((((.((((....))))))))((((........(((((......)))))......)))).......))))).)))))..... ( -25.54) >DroVir_CAF1 187471 100 + 1 -UAC-AAAAAAC-UGUAAU-----GGUUUGUUGGGGCUGGCCGCAUGGCAAAGAAAAUGGCGUUAGCUACAGCACAUAGAAUUGCAAAUUCAAUUUCGAUUCAAUUGA -...-.......-((((((-----.((.(((((..(((((((.(((..........)))).))))))..))))).))...))))))...((((((.......)))))) ( -22.60) >DroGri_CAF1 154309 100 + 1 -UUCGAAAAAAA-UGAAAU-----G-GUUGCUGGGGUUUGCCACAUGGCAAAGAAAAUGGCGUUAGCUACAGCACAUAGAAUUGCAAAUUCAAUUUCGAUUCAAUUGA -.((((((....-....((-----(-..(((((...((((((....)))))).....((((....)))))))))))).((((.....))))..))))))......... ( -24.30) >DroWil_CAF1 189899 98 + 1 ----AAACAAAAUUGAAA-----UG-UAUGCUAGAGUUUGUAGCACGGCAAAGAAAAUGGCGUUAGCUGCAGCGCAUAGAAUUGCAAAUUCAAUUUCAAUUCAAUUGA ----...(((((((((((-----(.-(((((....(((.((((((((.((.......)).)))..)))))))))))))((((.....)))).)))))))))...))). ( -22.70) >DroAna_CAF1 143620 101 + 1 GAGCAGGAGUAC-UAGUAA-----C-UGGGCUGGGGCUUCCCGCACGGCAAAGAAAAUGGCGUUAGCUGCAGCGCAUAGAAUUGCAAAUUCAAUUUCAAUUCAAUUGA ..((.......(-(((...-----)-)))((((.((((...(((.((..........)))))..)))).))))))...((((((.((((...))))))))))...... ( -25.30) >DroPer_CAF1 164414 106 + 1 GUGGGACGGGGA-CGUCGACGAAUG-UGAGCUGGGGCUUGCAGCACGGCAAAGAAAAUGGCGUUAGCUGCAGCGCAUAGAAUUGCAAAUUCAAUUUCAAUUCAAUUGA ....((((....-))))...((((.-((((.(((((((.((((((((.((.......)).)))..))))))))(((......)))...))))..))))))))...... ( -33.10) >consensus _UGCGAAAAAAA_UGAAAA_____G_UGUGCUGGGGCUUGCCGCACGGCAAAGAAAAUGGCGUUAGCUGCAGCGCAUAGAAUUGCAAAUUCAAUUUCAAUUCAAUUGA .............................((((.((((......(((.((.......)).))).)))).)))).....((((((.((((...))))))))))...... (-16.48 = -15.90 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:05 2006