Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,726,276 – 8,726,382 |
Length | 106 |
Max. P | 0.863446 |
Location | 8,726,276 – 8,726,382 |
---|---|
Length | 106 |
Sequences | 4 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 87.11 |
Mean single sequence MFE | -23.30 |
Consensus MFE | -22.11 |
Energy contribution | -22.43 |
Covariance contribution | 0.31 |
Combinations/Pair | 1.05 |
Mean z-score | -1.59 |
Structure conservation index | 0.95 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.863446 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8726276 106 + 27905053 AUAAACAGUAUACGAAAUUUAUAUUUACCUCCUAUUCUUCGCCAUAGCUUUUUAGUCAGCUGAACUAAGCUGCUUUGUGUGGCGUUAGCUAUCAAAUACUGUGGCA ........................................(((((((.......(.(((((......))))))((((.(((((....)))))))))..))))))). ( -24.60) >DroSec_CAF1 153089 106 + 1 AUAAACAGUAUACGAAAUUUAUAUUUACCUCCUAUUCUUCGCCAUAGCUUUUUAGUCAGCUGAACUAAGCUGCUUUGUGUGGCGUUAGCUAUCAAAUACUGUGGCA ........................................(((((((.......(.(((((......))))))((((.(((((....)))))))))..))))))). ( -24.60) >DroSim_CAF1 170244 106 + 1 AUAAACAGUAUACGAAAUUUAUAUUUACCUCCUAUUCUUCGCCAUUGCUUUUUAGUCAGCUGAACUAAGCUGCUUUGUGUGGCGUUAGCUAUCAAAUACUGUGGCA ....(((((((...((((....)))).....(((.....((((((.((.....((.(((((......)))))))..)))))))).))).......))))))).... ( -22.30) >DroYak_CAF1 161584 90 + 1 ----------------ACUAAUAUGGAUGUAAUAUUCUUCGCCAUUGCUCUUUAGUCAGCUGAACUAAGCUGCUUUGUGCGGCGUUAGCUAUCAAAUACUGUGGCA ----------------........................(((((.....(((.(..((((((.....(((((.....))))).))))))..))))....))))). ( -21.70) >consensus AUAAACAGUAUACGAAAUUUAUAUUUACCUCCUAUUCUUCGCCAUAGCUUUUUAGUCAGCUGAACUAAGCUGCUUUGUGUGGCGUUAGCUAUCAAAUACUGUGGCA ........................................(((((((...(((.(..((((((.....(((((.....))))).))))))..))))..))))))). (-22.11 = -22.43 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:04 2006