Locus 3265

Sequence ID 3R_DroMel_CAF1
Location 8,724,718 – 8,724,814
Length 96
Max. P 0.822163
window5275

overview

Window 5

Location 8,724,718 – 8,724,814
Length 96
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 75.19
Mean single sequence MFE -19.47
Consensus MFE -13.37
Energy contribution -13.53
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.69
SVM decision value 0.68
SVM RNA-class probability 0.822163
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8724718 96 - 27905053
-CGCCGUUAUGGCUGUGCUUUUGG--CAAAUGCAAAUGGUUUUUUGCAAGGACAAGUAGACCAGCAAAACACAAAAAAAAAAAAAAAAAACAAACUAGA
-.(((.....)))((((.((((((--(....))...((((((((((......)))).)))))).))))))))).......................... ( -18.80)
>DroPse_CAF1 166996 82 - 1
CCGUGGCUGUAGCUGUGCUUUUGG--CAAAUGCAAAUGGCAUUUCGCAAGGACAAGUAGACCAGCAAAACAUCACAC------------GGAGCAG---
((((((.(((.((((..((((((.--.((((((.....))))))(....)..)))).))..))))...))).).)))------------)).....--- ( -23.60)
>DroSim_CAF1 168721 85 - 1
-CGCCGUUAUGGCUGUGCUUUUGG--CAAAUGCAAAUGGUUUUUUGCAAGGACAAGUAGACCAGCAAACCAAAAAAA-----------AAAGAACUAGA
-.(((.....))).....((((((--....(((...((((((((((......)))).)))))))))..))))))...-----------........... ( -16.60)
>DroEre_CAF1 167810 90 - 1
-CGCCGUUAUGGCUGUGCUUUUGG--CAAAUGCAAAUGGUUUUUUGCAAGGACAAGUAGACCAGCAACCCAAAAAAAAAA-----AGAAAC-AAGUUAA
-.(((.....))).....((((((--....(((...((((((((((......)))).)))))))))..))))))......-----......-....... ( -16.60)
>DroWil_CAF1 188557 98 - 1
CUGUGGUUAUGGCUGUGCUUUUGGGCGAAAUGCAAAUGGUAUUUUGCAAGGACAAGUAGACCAGCAACCAAAAU-AGAGCAUUGAGAAAUAGAAUACGA
((((..((...(((.((.(((((((((((((((.....)))))))))..((.(.....).)).....)))))))-).)))....))..))))....... ( -24.60)
>DroYak_CAF1 160009 83 - 1
-CGCCGUUAUGGCUGUGCUUUUGG--CAAAUGCAAAUGGUUUUUUGCAAGGACAAGUAGACCAGCAACCCAAAAAAAAAA-------------AGUGAA
-.(((.....))).....((((((--....(((...((((((((((......)))).)))))))))..))))))......-------------...... ( -16.60)
>consensus
_CGCCGUUAUGGCUGUGCUUUUGG__CAAAUGCAAAUGGUUUUUUGCAAGGACAAGUAGACCAGCAAACCAAAAAAAAAA________AAA_AACUAGA
...........((((..((((((.......((((((......))))))....)))).))..)))).................................. (-13.37 = -13.53 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:57:03 2006