Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,713,412 – 8,713,510 |
Length | 98 |
Max. P | 0.937356 |
Location | 8,713,412 – 8,713,510 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 75.67 |
Mean single sequence MFE | -19.32 |
Consensus MFE | -15.91 |
Energy contribution | -16.47 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.16 |
Mean z-score | -1.35 |
Structure conservation index | 0.82 |
SVM decision value | 1.26 |
SVM RNA-class probability | 0.937356 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8713412 98 - 27905053 CGCGUUUUGUCAAGCCAACGUUGUCUUUGGCGUAAUUGCCAAUCAGCAGGACAGACCACGCCCCCAACUCCCAACCGUA--UAUUUUUUUUCC-UGUUUUC .((((((((((..(....)((((...((((((....)))))).))))..))))))..))))..................--............-....... ( -20.20) >DroSec_CAF1 140109 100 - 1 CGCGUUUUGUCAAGCCAACGUUGUCUUUGUCGUAAUUGCCAAUCAGCAGGACGGACCACGCCCCCAACUCCCCACUCCACCCAUUUUUUUUUC-UUUUUUC .((((...(((...((...((((...(((.((....)).))).)))).))...))).))))................................-....... ( -13.80) >DroSim_CAF1 157048 101 - 1 CGCGUUUUGUCAAGCCAACGUUGUCUUUGGCGUAAUUGCCAAUCAGCAGGACGGACCACGCCCCCAACUCCCCACUCCACCCAUUUUUUUUUCCUGUUUUC .((((...(((...((...((((...((((((....)))))).)))).))...))).))))........................................ ( -20.90) >DroEre_CAF1 155678 96 - 1 CGCGUUUUGUCAAGCCAACGUUGUCUUUGGCAUAAUUGCCAAUCAGCAGGACGGACCACGCCCUUUUCUCUCUUCU-----UUUUUUUUUCUCUCGUGUCC .((((...(((...((...((((...((((((....)))))).)))).))...))).))))...............-----.................... ( -21.60) >DroYak_CAF1 148361 86 - 1 CGCGUUUUGUCAAGCCAACGUUGUCUUUGGCAUAAUUGCCAAUCAGCAGGACUGACCACGCCCUUUU---------------UUUCUCGUUUCUUGUUUCC .((((...((((..((...((((...((((((....)))))).)))).))..)))).))))......---------------................... ( -22.90) >DroAna_CAF1 132668 86 - 1 CGAGUUUUGUCAACCCAUCGCUGUCCUUGUCUUAAUUGCCAAUCGGCUAC-GGGACCACGCCCUCUU--------------CAUUUUUUGCGGCAGAAUCC ...((((((((..(((...((((...(((.(......).))).))))...-))).....((......--------------........)))))))))).. ( -16.54) >consensus CGCGUUUUGUCAAGCCAACGUUGUCUUUGGCGUAAUUGCCAAUCAGCAGGACGGACCACGCCCCCAACUCCC_ACU_____CAUUUUUUUUUC_UGUUUCC .((((...(((...((...((((...((((((....)))))).)))).))...))).))))........................................ (-15.91 = -16.47 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:58 2006