Locus 3262

Sequence ID 3R_DroMel_CAF1
Location 8,708,074 – 8,708,166
Length 92
Max. P 0.739795
window5269

overview

Window 9

Location 8,708,074 – 8,708,166
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 79.13
Mean single sequence MFE -26.07
Consensus MFE -16.59
Energy contribution -16.95
Covariance contribution 0.36
Combinations/Pair 1.05
Mean z-score -1.63
Structure conservation index 0.64
SVM decision value 0.45
SVM RNA-class probability 0.739795
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8708074 92 + 27905053
GCACAUGGGUUGGGUUGGGCUAGCAUAUGUGACAGUGACAGUCGCAGGGGCGACAAUGUUGGCGCAGAAACCGCAAAUAUGUCCUUGUAUAA
.((((((.(((((......))))).))))))((((.(((.(((((....))))).(((((.(((.......))).)))))))).)))).... ( -29.50)
>DroVir_CAF1 164953 74 + 1
-C--------------UAGCUGGCAUAUGUGACAGAGGCAGCCGCAUGGGCGACAAUGUCGGCCUAAAAACCGCAAAUAUGUUUAGCUA---
-.--------------(((((((((((((((....((((.(((.....)))(((...))).))))......))))..)))).)))))))--- ( -23.70)
>DroPse_CAF1 149277 79 + 1
----------UG---UUGCCUAGCAUAUGUGACAGUGACAGUCGCAUGGGCGACAAUGUUGGCGCAAAAACCGCAAAUAUGUCGUUGUAGAU
----------((---((((((.....(((((((.......)))))))))))))))(((((.(((.......))).)))))(((......))) ( -23.10)
>DroYak_CAF1 142672 92 + 1
GCACAUGGGUUGGGCUGGGCUAGCAUAUGUGACAGUGACAGUCGCAGGGGCGACAAUGUUGGCGCAGAAACCGCAAAUAUGUCCUUGUAGAU
(.(((((.((.((.(((.((((((((.(((.......)))(((((....))))).)))))))).)))...))))...))))).)........ ( -30.60)
>DroAna_CAF1 127095 87 + 1
CCACAAGGGU-----UGGACUAGCAUAUGUGACAGUGACAGUCGCAGGGGCGACAAUGUUGGCGCAGAAACCGCAAAUAUGUCGCUCUAGAU
(((.......-----))).........((((((.......))))))(((((((((.((((.(((.......))).))))))))))))).... ( -26.40)
>DroPer_CAF1 145208 79 + 1
----------UG---UUGCCUAGCAUAUGUGACAGUGACAGUCGCAUGGGCGACAAUGUUGGCGCAAAAACCGCAAAUAUGUCGUUGUAGAU
----------((---((((((.....(((((((.......)))))))))))))))(((((.(((.......))).)))))(((......))) ( -23.10)
>consensus
_C________UG___UGGGCUAGCAUAUGUGACAGUGACAGUCGCAGGGGCGACAAUGUUGGCGCAAAAACCGCAAAUAUGUCGUUGUAGAU
......................((...((((((.......))))))...))((((.((((.(((.......))).))))))))......... (-16.59 = -16.95 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:57 2006