Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,705,188 – 8,705,287 |
Length | 99 |
Max. P | 0.902446 |
Location | 8,705,188 – 8,705,287 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 83.79 |
Mean single sequence MFE | -23.84 |
Consensus MFE | -21.23 |
Energy contribution | -21.42 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.05 |
Mean z-score | -1.98 |
Structure conservation index | 0.89 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.902446 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8705188 99 - 27905053 AGCUCAAACACUCGCCAAAGGGCCAACUGAACAAAGCCACUUGAGGUGCGCUCGAGCACUUUAACGGCUUCAUGUCAGCACACACCUG--CCCACAGCCAC-------- .(((.........(((....)))...((((...(((((..(((((((((......))))))))).)))))....))))..........--.....)))...-------- ( -27.00) >DroVir_CAF1 161595 99 - 1 AGCUCAAACACUUUGCAAAGGGCCAACUGAACAAAGCCACUUGAGGUGCGCACGAGCACUUUAACGGCUGCAUGUCAACACA--CCUGCACCUACACCUAC-------- .............((((..((......(((....((((..(((((((((......))))))))).)))).....))).....--))))))...........-------- ( -23.70) >DroPse_CAF1 146825 92 - 1 AGCUCAAACACUCUGCAAAGGGCCAACUGAACAAAGCCACUUGAGGUGCGCUCGAGCACUUUAACGGCUUCAUGUCAACACAUAC--A--CCCACU------------- .((...........))...(((...........(((((..(((((((((......))))))))).))))).((((....))))..--.--)))...------------- ( -22.90) >DroMoj_CAF1 202869 90 - 1 AGCUCAAACACUUUGCAAAGGGCCAACUGAACAAAGCCACUUGAGGUGCGCUCGAGCACUUUAACGGCUGCAUGUCAACACACACCUGUG------------------- .((((..............))))....(((....((((..(((((((((......))))))))).)))).....))).((((....))))------------------- ( -23.14) >DroAna_CAF1 124494 105 - 1 AGCUCAAACACUCGCCAAAGAGCCAACUGAACAAAGCCACUUGAGGUGCGCUCGAGCACUUUAACGGCUUCAUGUCAACACAUA--UA--CACACAGCCCCUAGCCAAC .(((......(((......)))....(((....(((((..(((((((((......))))))))).))))).((((....)))).--..--....))).....))).... ( -23.40) >DroPer_CAF1 142809 92 - 1 AGCUCAAACACUCUGCAAAGGGCCAACUGAACAAAGCCACUUGAGGUGCGCUCGAGCACUUUAACGGCUUCAUGUCAACACAUAC--A--CCCACU------------- .((...........))...(((...........(((((..(((((((((......))))))))).))))).((((....))))..--.--)))...------------- ( -22.90) >consensus AGCUCAAACACUCUGCAAAGGGCCAACUGAACAAAGCCACUUGAGGUGCGCUCGAGCACUUUAACGGCUUCAUGUCAACACAUAC_UA__CCCACA_____________ .((((..............))))....(((...(((((..(((((((((......))))))))).)))))....)))................................ (-21.23 = -21.42 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:56 2006