| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,704,882 – 8,704,987 |
| Length | 105 |
| Max. P | 0.500000 |
| Location | 8,704,882 – 8,704,987 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.32 |
| Mean single sequence MFE | -38.12 |
| Consensus MFE | -23.13 |
| Energy contribution | -23.72 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.61 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8704882 105 - 27905053 CAUACUCUCCUUUGGCCGGAUGUGGUGCUGCCAGCUUCCGGUUAGCUGAGUCUUAAGCGCCC-GC-----------UACGUGAGUGGUGUGCAAAUAGUUUCAAUUGCUUAUUU-UAC-- ...((((....(((((((((.((((.....))).).)))))))))..))))..(((((((.(-((-----------(((....)))))).))....(((....))))))))...-...-- ( -34.70) >DroVir_CAF1 161279 109 - 1 UAGACGUUGCCACGACCGGAUGUGGUGCUGCCAGCUUCCGGUUAGCUGAGUCUUAAGCGCGC-GCUC---------UACGUGAGUGGUGUGCAAAUAGUUUCAAUUGCGGCUUU-UGCGU .((((...((...(((((((.((((.....))).).))))))).))...))))...((((((-((.(---------(((....)))).)))).((.(((..(....)..))).)-))))) ( -40.80) >DroGri_CAF1 132926 110 - 1 UAGUCGCAACCUCGACCGGAUGUGGUGCUGCCAGCUUCCGGUUUGCUGAGUCUUAAGCGCGCUGCUG---------UACGUGAGUGGUGUGCAAAUAGUUUCAAUUGCGGCUUU-UGCGU .((((((((....(((((((.((((.....))).).)))))))...((((.((...((((((..((.---------......))..))))))....)).)))).))))))))..-..... ( -40.80) >DroWil_CAF1 162265 96 - 1 ------------CGACCGGAUGCGGUAAGGCCGACUUCCGGUUUAGUGAGUCUUAAGCGUCA-GC-----------UACGUGAGUGGUGUGCAAAUAGUUUCAAUUGCGGCUUUUUGCGU ------------.(((((((..(((.....)))...))))((((((......))))))))).-((-----------(((....)))))..(((((.(((..(....)..))).))))).. ( -32.50) >DroMoj_CAF1 202526 117 - 1 UACACCU-ACCCGGACCGGAUGUGGUGCUGCCAGCUUCCGGUUAGCUGAGUCUUAAGCGUGC-GCUCUCCACGUGCUACGUGAGUGGUGUGCAAAUAGUUUCAAUUGCGGCUUU-UGCGC .(((((.-((.(.(((((((.((((.....))).).))))))).............((((((-((.......)))).))))).)))))))(((((.(((..(....)..)))))-))).. ( -37.80) >DroPer_CAF1 142517 107 - 1 CAGCUUCGCUUUGGACCGGAUGUGGUGCUGCCAGCUUCCGGUUAGCUGAGUCUCGAAAGCCC-GC-----------UACGUGAGUGGUGUGCAAAUAGUUUCAAUUGCGGCUUU-UGCGC ..((((.(((...(((((((.((((.....))).).)))))))))).))))..(((((((((-((-----------(((....)))))).((((..........))))))))))-))... ( -42.10) >consensus UAGACGC_ACCUCGACCGGAUGUGGUGCUGCCAGCUUCCGGUUAGCUGAGUCUUAAGCGCCC_GC___________UACGUGAGUGGUGUGCAAAUAGUUUCAAUUGCGGCUUU_UGCGU .............(((((((.((((.....))).).))))))).((.(((((........................(((....)))....((((..........)))))))))...)).. (-23.13 = -23.72 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:55 2006