Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,250,191 – 1,250,307 |
Length | 116 |
Max. P | 0.862729 |
Location | 1,250,191 – 1,250,307 |
---|---|
Length | 116 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 76.16 |
Mean single sequence MFE | -31.75 |
Consensus MFE | -17.91 |
Energy contribution | -19.60 |
Covariance contribution | 1.69 |
Combinations/Pair | 1.07 |
Mean z-score | -2.09 |
Structure conservation index | 0.56 |
SVM decision value | 0.84 |
SVM RNA-class probability | 0.862729 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1250191 116 + 27905053 GGCAGCGUCUGCGCUGCGUACACGGGAAAACCCGUCUGCAGGGAGAAAGCGUAGACUAUUUUUUUAGAGAAGCACUUUAAAUGAAAAGCUGCUGAGAAGGUGGUUUUAAGUGGGCA .((((((....))))))(((.(((((....))))).))).....(...((..(((((((((((((((...(((..(((....)))..))).)))))))))))))))...))...). ( -41.30) >DroSec_CAF1 25413 114 + 1 GGCAGCGUCUGCUCUACGUACACGGGAAAACCCGUCUGCAGGGAGUAAACGUAGACUAUU--UUUAGAGAAGCACUUUAAAUGAAAAGCUGCCGAGAAGGUGGUUUUAAGUGGGCA .((.((((.((((((..(((.(((((....))))).)))..)))))).))))...(((((--(((((((.....))))))....(((((..((.....))..))))))))))))). ( -40.30) >DroEre_CAF1 24703 90 + 1 GGCAGCGUCUGCGCUACGUACACGGGAAAACCCG--------------------ACUAUU--UUUAGAAAAGCACUUAAUAUCAAAACCUGCAAA---GGUGGUUU-AAAUGGACU .((((...))))(((.......((((....))))--------------------.(((..--..)))...))).............((((....)---)))(((((-....))))) ( -18.20) >DroYak_CAF1 28838 101 + 1 GGCAGAGUCUGCGCUACGUACACGGGAAAUCCCGUCUGCAGGAAGAAA-AGUAGACUAUU--UUUAGAGAAGCACUU---AUCAAAAGCUGCAAAGAAGGUGGCUU-A-------- .((..(((((((.((.((((.(((((....))))).))).)..))...-.))))))).((--(.....)))))....---.....((((..(.......)..))))-.-------- ( -27.20) >consensus GGCAGCGUCUGCGCUACGUACACGGGAAAACCCGUCUGCAGGGAGAAA_CGUAGACUAUU__UUUAGAGAAGCACUUUAAAUCAAAAGCUGCAAAGAAGGUGGUUU_AAGUGGGCA .((((...))))((((((((.(((((....))))).)))................(((......)))....(((((((......)))).))).......)))))............ (-17.91 = -19.60 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:29 2006