Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,698,466 – 8,698,564 |
Length | 98 |
Max. P | 0.603968 |
Location | 8,698,466 – 8,698,564 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 80.43 |
Mean single sequence MFE | -22.23 |
Consensus MFE | -15.94 |
Energy contribution | -15.67 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.30 |
Mean z-score | -1.26 |
Structure conservation index | 0.72 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603968 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8698466 98 - 27905053 UU-UGGGUCACAAUUAAAUCCAGACUUGCAUAAGUAGUUGACUGUCAUCACUUAGUCGGUUGUCAGCUUCGUCACUAAGCCCAGUUGAUAGGCAAUAAU ((-(((((.........))))))).((((........(((((((........)))))))(((((((((..((......))..))))))))))))).... ( -21.40) >DroPse_CAF1 140072 82 - 1 -----------------ACACACAGUUGCAUAAGUAGUUGGCUGUCAUCACUUAGUCGGUUGUCAACUUCGUCAAUAGGCCCAUUUGAUGGCCAAUAAU -----------------...................(((((((((((.......(((.((((.(......).)))).))).....)))))))))))... ( -19.70) >DroEre_CAF1 139053 99 - 1 UUUCGGGCCUCAAUUAAAUCCAGACUUGCAUAAGUAGUUGUCUGUCAUCACUUAGUCGGCUGUCAGCUUCGUCACUAAGCCCAGUUGAUAGGCAAUAAU ......((((..........(((((((((....))))..)))))..........((((((((...((((.......)))).))))))))))))...... ( -22.80) >DroYak_CAF1 132816 98 - 1 UU-GGGGUCACAACUAAAUCCAGACUUGCAUAAGUAGUUGGCUGUCAUCACUUAGUCGGUUGUCAGCCUCGUCACUAAGCCCAGUUGAUAGGCAAUAAU ..-(((((.((((((.......((((.((....))))))(((((........)))))))))))..)))))........(((.........)))...... ( -22.00) >DroAna_CAF1 117551 84 - 1 ---------------ACUGCCAGACUUGCAUAAGUAGUUGGCUGUCAUCGCUUAGUUGGCUGUCAACUUUGUCACUAAGCCCAGUUGAUAGCCAAUAAU ---------------((.(((((.((.((....))))))))).)).........((((((((((((((..((......))..))))))))))))))... ( -28.20) >DroPer_CAF1 136015 82 - 1 -----------------ACACACAGUUGCAUAAGUAGUUGGCUGUCAUCACUUAGUCGGUUGUCAACUUCGUCACUAAGCCCAUUUGAUGGCCAAUAAU -----------------...................(((((((((((...(((((((((.........)))..))))))......)))))))))))... ( -19.30) >consensus _______________AAAUCCAGACUUGCAUAAGUAGUUGGCUGUCAUCACUUAGUCGGUUGUCAACUUCGUCACUAAGCCCAGUUGAUAGCCAAUAAU ....................................(((((((((((...((((((.(((.....))).....))))))......)))))))))))... (-15.94 = -15.67 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:54 2006