Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,688,025 – 8,688,128 |
Length | 103 |
Max. P | 0.657860 |
Location | 8,688,025 – 8,688,128 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 82.86 |
Mean single sequence MFE | -30.35 |
Consensus MFE | -26.06 |
Energy contribution | -25.75 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.21 |
Mean z-score | -1.51 |
Structure conservation index | 0.86 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657860 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8688025 103 - 27905053 AGUGUCGUCUCCGUCGUCGUCGCUCGUUAGAAUUUGCGGAUUGAAUUUCAAUGGCGAUUGAUGACGGCU----GCAUGUGUGUGUGCACUGCGAAUAAAUAGUAUUA ....((....(((((((((((((.((((..(((((.......)))))..)))))))).)))))))))..----(((.((((....)))))))))............. ( -33.10) >DroEre_CAF1 128921 103 - 1 AGUGUCGUCUCCGUCGUCGUCGCUCGUUAGAAUUUGCGGAUUGAAUUUCAAUGGCGAUUGAUGACGGCU----GCAUGUGUGUGUGCACUGCAAAUAAAAAUGAGUA ....((((..(((((((((((((.((((..(((((.......)))))..)))))))).))))))))).(----(((.((((....)))))))).......))))... ( -34.60) >DroWil_CAF1 138855 91 - 1 UGUGUCGUC---AUUGGCGUUGCUCGUUAGAAUUUGCGGAUUGAAUUUCAAUGGCGAUUGAUGAUGCCUGCCUGCAUGUGUGUGAGUUUUGUGA------------- .((((((((---(.....(((((.((((..(((((.......)))))..))))))))))))))))))..((..(((....)))..)).......------------- ( -20.30) >DroYak_CAF1 121407 103 - 1 AGUGUCGUCUCCGUCGUCGUCGCUCGUUAGAAUUUGCGGAUUGAAUUUCAAUGGCGAUUGAUGACGGCU----GCAUGUGUGUGUGCACUGCGAAUAAAGAGUAUUA ((((((....(((((((((((((.((((..(((((.......)))))..)))))))).))))))))).(----(((.((((....))))))))......)).)))). ( -33.40) >consensus AGUGUCGUCUCCGUCGUCGUCGCUCGUUAGAAUUUGCGGAUUGAAUUUCAAUGGCGAUUGAUGACGGCU____GCAUGUGUGUGUGCACUGCGAAUAAA_AGUAUUA ..........(((((((((((((.((((..(((((.......)))))..)))))))).)))))))))......(((.((((....)))))))............... (-26.06 = -25.75 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:48 2006