Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,687,808 – 8,687,913 |
Length | 105 |
Max. P | 0.834084 |
Location | 8,687,808 – 8,687,913 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 91.05 |
Mean single sequence MFE | -19.03 |
Consensus MFE | -14.70 |
Energy contribution | -14.90 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.90 |
Structure conservation index | 0.77 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.834084 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8687808 105 + 27905053 CCCUCAACAAGCUGUGCCGGCUAAUACCUGCACACAAGCAACCGCACAAUCACAUGCACUGAGAAAAACAAAUAGGUGUACAAGUUGCAUUAAUCAAAAAUAAAA ..((((....(((((((.((......)).))))...)))....(((........)))..))))...........((((((.....)))))).............. ( -18.40) >DroSec_CAF1 114767 105 + 1 CCCUCAACAAGCUGUGCCGGCUAAUACCUGCACACAAGCAACCGCACAAUCACAUGCACUGAGAAAAACAAAUAGGUGUACAAGUUGUAGCAAUCAAAAAUUAAA ..........(((((((.((......)).))))...)))....(((((((....((((((..............))))))...))))).)).............. ( -20.04) >DroSim_CAF1 131348 105 + 1 CCCUCAACAAGCUGUGCCGGCUAAUACCUGCACACAAGCAACCGCACAAUCACAUGCACUGAGAAAAAUAAAUAGGUCUAAAAGUUGUAGUAAUCAAAAAUGAAA ..((((((..(((((((.((......)).))))...)))....(((........)))..........................)))).))............... ( -16.10) >DroEre_CAF1 128668 104 + 1 CCCUCAACAAGCUGUGCCGGCUAAUACCUGCACACAAGCAACCGCACAAUCACAUGCACUG-GAAAAACCAAUAGCUGUACAAUUUGUGUGAAUCAAAAAUUAAA ..........(((((((.((......)).))))...)))...(((((((..(((.((..((-(.....)))...))))).....))))))).............. ( -22.10) >DroYak_CAF1 121155 105 + 1 CCCUCAACAAGCUGUGCCGGCUAAUACCUGCACACAAGCAACCGCACAAUCACAUGCACUGAGAAAAACCAAUGGCAGUUAAAUUUGUAUAAAUACAAAAUUUAC ..((((....(((((((.((......)).))))...)))....(((........)))..))))....................((((((....))))))...... ( -18.50) >consensus CCCUCAACAAGCUGUGCCGGCUAAUACCUGCACACAAGCAACCGCACAAUCACAUGCACUGAGAAAAACAAAUAGGUGUACAAGUUGUAUUAAUCAAAAAUUAAA ..((((....(((((((.((......)).))))...)))....(((........)))..)))).......................................... (-14.70 = -14.90 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:47 2006