Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,682,979 – 8,683,086 |
Length | 107 |
Max. P | 0.525393 |
Location | 8,682,979 – 8,683,086 |
---|---|
Length | 107 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 78.19 |
Mean single sequence MFE | -27.09 |
Consensus MFE | -16.15 |
Energy contribution | -18.70 |
Covariance contribution | 2.55 |
Combinations/Pair | 1.23 |
Mean z-score | -1.46 |
Structure conservation index | 0.60 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.525393 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8682979 107 + 27905053 UUUCGUCACACUUUUAAAGAGACUUGCCUUCAAUUAAGUGAAAUUCGUCACUAGGCAAGGGGAGUUAAUAAUCAGCUGGAGAGGUGUAACGAAAGUGGGGUGGAUUU ((((((.((((((((..((...(((((((.......(((((......))))))))))))..((........))..))..)))))))).))))))............. ( -30.01) >DroSec_CAF1 109824 107 + 1 AUUCGUCACACUUUUAAAGCGACUUGCCUUCAAUUAAGUGAAAUUCGUCACUAGGCAACGGGAGUAAAUAAUCAGCUGGAGAGGUGUAACGAAAGUGGGGUGGAUUU .(((((.((((((((..(((....(((((.......(((((......))))))))))((....)).........)))..)))))))).))))).............. ( -30.31) >DroSim_CAF1 126459 107 + 1 UUUUGUCACACUUUUAAAGCGACUUGCCUUCAAUUAAGUGAAAUUCGUCACUAGGCAGGGGGAGUAAAUAAUCAGCUGGAGAGGUGUAACGAAAGUGGGGUGGAUUU .((..((((((((((..(((..(((((((.......(((((......))))))))))))..((........)).)))..)))))))).((....))..))..))... ( -31.81) >DroEre_CAF1 123933 107 + 1 UUUCGUCACACUUUUAAAGCGGCUUACCUUCAAUUAAGUGAAUUUCGUCACUCGGCAAGGGAAGUAAAUAAUCAGCUGAAGAGGGGUAACGAAAGUGGGGUAGAUUU ((((((.((.(((((..(((.((((.((((...(..(((((......)))))..).)))).)))).........)))..))))).)).))))))............. ( -24.40) >DroYak_CAF1 116374 107 + 1 UUUCGUCACACUUUUAAAGCGACUUGCCUUCAAUUAAGUGAAUUUCGUCACUAGGCAAGGGGAGUAUAUAAUCAGCUGAAGAGGUGUAACGAAAGUGGUGCAGAUUU ((((((.((((((((..(((..(((((((.......(((((......))))))))))))..((........)).)))..)))))))).))))))............. ( -33.01) >DroAna_CAF1 103245 81 + 1 UUUCACCACAAGCUUUAAUCA-GAUGCUUUCAAUUUAGUAGAUUUCGGCAU--GGAAGGAGGA----------------ACAGG------GAGCAUGGAAAAGG-UU ..........((((((..((.-.(((((..(..(((......((((.....--.))))...))----------------)..).------.))))).)).))))-)) ( -13.00) >consensus UUUCGUCACACUUUUAAAGCGACUUGCCUUCAAUUAAGUGAAAUUCGUCACUAGGCAAGGGGAGUAAAUAAUCAGCUGGAGAGGUGUAACGAAAGUGGGGUAGAUUU .(((((.((((((((..(((.((((.(((((.....(((((......)))))..).)))).)))).........)))..)))))))).))))).............. (-16.15 = -18.70 + 2.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:45 2006