Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,675,881 – 8,675,984 |
Length | 103 |
Max. P | 0.999953 |
Location | 8,675,881 – 8,675,984 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 91.50 |
Mean single sequence MFE | -26.30 |
Consensus MFE | -20.92 |
Energy contribution | -21.52 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.12 |
Mean z-score | -2.26 |
Structure conservation index | 0.80 |
SVM decision value | 1.63 |
SVM RNA-class probability | 0.968701 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8675881 103 + 27905053 CUCGCAAAAAACUGCAGACUUUUAUCUACCGCUUGCAUAUUCGUAUGCAAAGGUUGUUUGGUUGAAAAUAUCAACCCCAGAGCUCUGAAAUAAAUUUUUUCCG ..((.((((((...((((((((.....(((..(((((((....))))))).))).....((((((.....))))))..)))).)))).......)))))).)) ( -22.30) >DroSec_CAF1 102823 102 + 1 CUCGCAAAAAACUGCAGACUUUUAUCUACCGCUUGCAUAUUCGUAUGCAAAGGUUGU-UGGUUGAAAAUAUCAACCCUAGAGCUCUGGAAUACAUUUUUUGCG ..(((((((((.(.((((.(((((...(((..(((((((....))))))).)))...-.((((((.....)))))).))))).)))).).....))))))))) ( -28.60) >DroSim_CAF1 119452 102 + 1 CUCGCAAAAAACUGCAGACUUUUAUCUACCGCUUGCAUAUUCGUAUGCAAAGGUUGU-UGGUUGAAAAUAUCAACCCUAGAGCUCUGGAAUAAAUUUUUUGCG ..(((((((((.(.((((.(((((...(((..(((((((....))))))).)))...-.((((((.....)))))).))))).)))).).....))))))))) ( -28.60) >DroEre_CAF1 116240 101 + 1 CUCGCAAAA-ACUGCAGACUUUUAUCUACUACUUGCAUAUUCCUAUGCAAAGGUUGU-UGGCUGAAUAUACCAACCCUAGAGCUGUGGAAUAAAUUGUUUGUG .........-...((((((.(((((((((..((((((((....)))))..(((..((-(((.........)))))))).)))..)))).)))))..)))))). ( -24.80) >DroYak_CAF1 108920 102 + 1 CUCGCAAAAUGCUGCAGACUUUUAUCUGCUGCUUGCAUAUUCGUAUGCAAAGGUUGU-UGGUUGAAUAUACCAACCUCAGAGCUCUGGAAUAAAUUGUUUGUG ..((((((..((.(((((......))))).))(((((((....))))))).....((-((((.......)))))).((((....)))).........)))))) ( -27.20) >consensus CUCGCAAAAAACUGCAGACUUUUAUCUACCGCUUGCAUAUUCGUAUGCAAAGGUUGU_UGGUUGAAAAUAUCAACCCUAGAGCUCUGGAAUAAAUUUUUUGCG ..(((((((((.(.((((((((.....(((..(((((((....))))))).))).....(((((.......)))))..)))).)))).).....))))))))) (-20.92 = -21.52 + 0.60)
Location | 8,675,881 – 8,675,984 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 91.50 |
Mean single sequence MFE | -29.70 |
Consensus MFE | -26.74 |
Energy contribution | -27.82 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.12 |
Mean z-score | -3.29 |
Structure conservation index | 0.90 |
SVM decision value | 4.82 |
SVM RNA-class probability | 0.999953 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8675881 103 - 27905053 CGGAAAAAAUUUAUUUCAGAGCUCUGGGGUUGAUAUUUUCAACCAAACAACCUUUGCAUACGAAUAUGCAAGCGGUAGAUAAAAGUCUGCAGUUUUUUGCGAG ((.((((((((....((((....))))((((((.....))))))......(.((((((((....)))))))).)((((((....)))))))))))))).)).. ( -29.00) >DroSec_CAF1 102823 102 - 1 CGCAAAAAAUGUAUUCCAGAGCUCUAGGGUUGAUAUUUUCAACCA-ACAACCUUUGCAUACGAAUAUGCAAGCGGUAGAUAAAAGUCUGCAGUUUUUUGCGAG ((((((((((..........((.....((((((.....)))))).-.......(((((((....))))))))).((((((....)))))).)))))))))).. ( -32.90) >DroSim_CAF1 119452 102 - 1 CGCAAAAAAUUUAUUCCAGAGCUCUAGGGUUGAUAUUUUCAACCA-ACAACCUUUGCAUACGAAUAUGCAAGCGGUAGAUAAAAGUCUGCAGUUUUUUGCGAG (((((((((((.........((.....((((((.....)))))).-.......(((((((....))))))))).((((((....))))))))))))))))).. ( -32.90) >DroEre_CAF1 116240 101 - 1 CACAAACAAUUUAUUCCACAGCUCUAGGGUUGGUAUAUUCAGCCA-ACAACCUUUGCAUAGGAAUAUGCAAGUAGUAGAUAAAAGUCUGCAGU-UUUUGCGAG ...........((((((...((...(((((((((.......))))-))..)))..))...))))))((((((..((((((....))))))...-.)))))).. ( -27.60) >DroYak_CAF1 108920 102 - 1 CACAAACAAUUUAUUCCAGAGCUCUGAGGUUGGUAUAUUCAACCA-ACAACCUUUGCAUACGAAUAUGCAAGCAGCAGAUAAAAGUCUGCAGCAUUUUGCGAG (.((((..........(((....))).((((((.....)))))).-.......(((((((....)))))))((.((((((....)))))).))..)))).).. ( -26.10) >consensus CGCAAAAAAUUUAUUCCAGAGCUCUAGGGUUGAUAUUUUCAACCA_ACAACCUUUGCAUACGAAUAUGCAAGCGGUAGAUAAAAGUCUGCAGUUUUUUGCGAG (((((((((((.........((.....((((((.....)))))).........(((((((....))))))))).((((((....))))))))))))))))).. (-26.74 = -27.82 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:43 2006