Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,662,964 – 8,663,074 |
Length | 110 |
Max. P | 0.751108 |
Location | 8,662,964 – 8,663,074 |
---|---|
Length | 110 |
Sequences | 6 |
Columns | 115 |
Reading direction | forward |
Mean pairwise identity | 82.21 |
Mean single sequence MFE | -32.92 |
Consensus MFE | -25.17 |
Energy contribution | -25.73 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.15 |
Mean z-score | -1.79 |
Structure conservation index | 0.76 |
SVM decision value | 0.48 |
SVM RNA-class probability | 0.751108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8662964 110 + 27905053 AAUUUUUCCUACUGCACUUUUUGUGCUGAUUUCCAGUGGUUGCUCCAGCCGCAAAUCGUGUUAGCCACGCCAUUAGCAAAAGCUCGCCGAGAA--UGGCGGAGCAUCAAGGA--- ......((((...((((.....))))((((((((.(((((((...))))))).....(((.....)))((((((.((........))....))--)))))))).))))))))--- ( -35.00) >DroSec_CAF1 89827 110 + 1 UACUUUUCCUACUGCACUUUUUGUGCUUAUUUUCAGUGGCUGCUCCAGCCGCAAAUCGUGUUAGCCACGCCAUUAGCAAAAGCUCGCCGAGAA--UGGCGGAUCAUCAUGGA--- .............((((.....)))).........(((((((...)))))))...(((((.......(((((((.((........))....))--)))))......))))).--- ( -31.42) >DroSim_CAF1 106305 110 + 1 AAUUUUUCCUACUGCACUUUUUGUGCUUAUUUUCAGUGGCUGCUUCAGCCGCAAAUCGUGUUAGCCACGCCAUUAGCAAAAGCUCGCCGAGAA--UGGCGGAGCAUCAUGGA--- .............((((.....)))).........(((((((...)))))))...(((((...((..(((((((.((........))....))--)))))..))..))))).--- ( -35.40) >DroEre_CAF1 103284 96 + 1 AUUUUU--------------CCGUGCUGAUUUUCAGUGGCUGUUCCAGCCGCAAAUCGUGUUAGCCACGCCAUUAGCAAAAGCUCGCCGAGAA--CGGCGGAGCAUCAAGGA--- .....(--------------((.(((((((.....(((((((...)))))))....((((.....))))..)))))))...((((((((....--)))).)))).....)))--- ( -36.10) >DroYak_CAF1 95742 110 + 1 AUUUUUGUCCACUGCACUUUUGGUGCUGAUUUUCAGUGGCUGUUCCAACCGCAAAUCGUGUUAGCCACGCCAUUAGCAAAAGCUCGCCGAGAA--CGGCGAAGCAUCAAGGA--- .......(((...((((.....))))((((.....(((((((.......(((.....))).)))))))((.....))....((((((((....--))))).))))))).)))--- ( -33.00) >DroAna_CAF1 84096 113 + 1 AAUUUCUCAAAGUGCAUUUG--UUGCCGAUUUUCGAUUGCUGUUCCAGCCGCAAAUCGUGUUAGCCACGCCAUUAGCAAAAGCUUGCAGAGAAACCGGCACAGUAGCAACAACAA .................(((--((((((.....))..((((((....((((....((.(((.(((...((.....))....))).))))).....)))))))))))))))))... ( -26.60) >consensus AAUUUUUCCUACUGCACUUUUUGUGCUGAUUUUCAGUGGCUGCUCCAGCCGCAAAUCGUGUUAGCCACGCCAUUAGCAAAAGCUCGCCGAGAA__CGGCGGAGCAUCAAGGA___ .......................(((((((.....(((((((...)))))))....((((.....))))..)))))))...((((((((......))))).)))........... (-25.17 = -25.73 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:37 2006