Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,660,709 – 8,660,807 |
Length | 98 |
Max. P | 0.983396 |
Location | 8,660,709 – 8,660,807 |
---|---|
Length | 98 |
Sequences | 3 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 63.37 |
Mean single sequence MFE | -25.03 |
Consensus MFE | -12.55 |
Energy contribution | -15.33 |
Covariance contribution | 2.78 |
Combinations/Pair | 1.14 |
Mean z-score | -2.01 |
Structure conservation index | 0.50 |
SVM decision value | 1.94 |
SVM RNA-class probability | 0.983396 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8660709 98 + 27905053 UUUUAUGAAAUGAGGGGCGGAUAACUGUGAAAAGGGGAUCGCUGGGAAAUGGGGGGGUGGGAACAAAAAGCCGAGCCGUUUUGCAACUGAGAAACAAA ..........(.((.(((((.(..((......))..).)))))(.(((((((...(((...........)))...))))))).)..)).)........ ( -17.50) >DroPse_CAF1 99297 77 + 1 CUUUAUGAUCCGACGGGAUCAUAU--------------------GGA-AGGGGUGAGUGGGGAGGGGCCGGCUGGUUCCUUUGCCACACAGAAACAAA ((.((((((((....)))))))).--------------------)).-.....((.(((((((((((((....))))))))).)))).))........ ( -29.20) >DroPer_CAF1 95314 77 + 1 CUUUAUGAUCCGACGGGAUCAUAU--------------------GGA-AGGGGUGAGUGGGGAGGGGCCGGCUGGUUCCUUUGCAACACAGAAACAAA ((.((((((((....)))))))).--------------------)).-....(((..((.(((((((((....))))))))).)).)))......... ( -28.40) >consensus CUUUAUGAUCCGACGGGAUCAUAU____________________GGA_AGGGGUGAGUGGGGAGGGGCCGGCUGGUUCCUUUGCAACACAGAAACAAA ...((((((((....)))))))).............................(((...(.(((((((((....))))))))).)..)))......... (-12.55 = -15.33 + 2.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:36 2006