Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,657,586 – 8,657,702 |
Length | 116 |
Max. P | 0.884323 |
Location | 8,657,586 – 8,657,702 |
---|---|
Length | 116 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 92.12 |
Mean single sequence MFE | -28.82 |
Consensus MFE | -25.90 |
Energy contribution | -25.42 |
Covariance contribution | -0.48 |
Combinations/Pair | 1.13 |
Mean z-score | -1.42 |
Structure conservation index | 0.90 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.884323 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8657586 116 + 27905053 UGCCAAAGUUCAAUGUUAAUUUUGGACAUUUACCUGUGCUAAUAUUGGUCACAUGCAGACAUACAGCAGUAGGCAAAAAGCUAGUAGAUAUGUGGGUGCUGGUAAACUAAUAAAAC-- (((((..((((((........))))))...((((..(.....(((((((....(((..((........))..)))....))))))).....)..)))).)))))............-- ( -26.20) >DroSec_CAF1 84408 118 + 1 UGCCAAAGUUCAAUGUUAAUUUUGGACAUUUACCUGUGCUAAUAUUGGCCACAUGCAGACAUACAGCAGUAGGCAAAAAUCUAGUGGAUAUGUGGGUGCUGGUAAGCCAAACACAUUC ((((((((((.......)))))))).))((((((.(..((.((((...((((.(((.........))).((((......))))))))..)))).))..).))))))............ ( -28.00) >DroSim_CAF1 100732 118 + 1 UGCCAAAGUUCAAUGUUAAUUUUGGACAUUUACCUGUGCUAAUAUUGGCCACAUGCAGACAUACAGCAGUAGGCAAAAAGCUAGUGGAUAUGUGGGUGCUGGUAAACUAAGCACAUUC (((....((((((........)))))).((((((.(..((.((((...((((.(((.........)))...(((.....))).))))..)))).))..).))))))....)))..... ( -31.40) >DroEre_CAF1 97627 118 + 1 UGCCAAAGUUCAAUGUUAAUUUUGGACAUUUACCUGUGCUAAUAUUGGCCACAUGCAGACAUACAGCAGUAGGCAAAAAGCUAGUAAAUAGAUGGGUGCAGGUAGACUAAACACACCU ((((((((((.......)))))))).))((((((((..((..(((((((....(((..((........))..)))....)))))))........))..))))))))............ ( -30.80) >DroYak_CAF1 90015 118 + 1 UGCCAAAGUUCAAUGUUAAUUUUGGACAUUUACCUGUGCUAAUAUUGGCCACAUGCAGACAUACAGUAGUAGGCAAAAAGCUAGUAAACAGAUGGGUGCUGGUAAACUAAACACACCU (((((..((((((........))))))...(((((((.((..(((((((....(((..((........))..)))....)))))))...))))))))).))))).............. ( -27.70) >consensus UGCCAAAGUUCAAUGUUAAUUUUGGACAUUUACCUGUGCUAAUAUUGGCCACAUGCAGACAUACAGCAGUAGGCAAAAAGCUAGUAGAUAUGUGGGUGCUGGUAAACUAAACACACCC ((((((((((.......)))))))).))((((((.(..((..(((((((....(((..((........))..)))....)))))))........))..).))))))............ (-25.90 = -25.42 + -0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:31 2006