Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,657,418 – 8,657,508 |
Length | 90 |
Max. P | 0.994270 |
Location | 8,657,418 – 8,657,508 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 87.79 |
Mean single sequence MFE | -35.65 |
Consensus MFE | -30.81 |
Energy contribution | -30.84 |
Covariance contribution | 0.03 |
Combinations/Pair | 1.12 |
Mean z-score | -3.59 |
Structure conservation index | 0.86 |
SVM decision value | 2.46 |
SVM RNA-class probability | 0.994270 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8657418 90 - 27905053 GGGCCCUGCAUUGGGCUUAGUGUUAAGCUUAAUGCCGGGGCCAGACAUC-------CGACU-CCCGAUAACAGGAUGUCCAUACAACUACGGCUACAA-- .((((((((((((((((((....))))))))))).))))))).((((((-------(....-..........)))))))...................-- ( -37.54) >DroSec_CAF1 84240 90 - 1 GGGCUCUGCAUUGGGCUUAGUGUUAAGCUUAAUGCCGGGGCCAGACAUC-------CGACU-CCCGAUAACAGGAUGUCCAUACAACUACGGCUACAA-- .((((((((((((((((((....))))))))))).))))))).((((((-------(....-..........)))))))...................-- ( -34.54) >DroSim_CAF1 100564 90 - 1 GGGCCCUGCAUUGGGCUUAGUGUUAAGCUUAAUGCCGGGGCCAGACAUC-------CGACU-CCCGAUAACAGGAUGUCCAUACAACUACGGCUACAA-- .((((((((((((((((((....))))))))))).))))))).((((((-------(....-..........)))))))...................-- ( -37.54) >DroEre_CAF1 97459 90 - 1 GGGCCCUGCAUUGGGCUUAGUGUUAAGCUUAAUGCCGGGGCCAGACAUC-------CGACU-CCCGAUAACAGGAUGUCCAUACAACUACGGCAACGA-- .((((((((((((((((((....))))))))))).))))))).((((((-------(....-..........)))))))..........((....)).-- ( -40.84) >DroYak_CAF1 89840 92 - 1 GGGCCCUGCAUUGGGCUUAGUGUUAAGCUUAAUGCCCGGGCCAGACAUC-------CGACU-CCCGAUAACAGGAUGUCCAUACAACUACGGCUACAACU .(((((.((((((((((((....))))))))))))..))))).((((((-------(....-..........)))))))..................... ( -35.64) >DroPer_CAF1 91779 88 - 1 GGGGUCUGCAUUGGGCUUAGUGUUAAGCCUAAUGCCGGGUCCAGACAUCAGACAUACGACUCCCCGAUAGCACAAAGACG----A------GCAACAA-- ((((...((((((((((((....))))))))))))((.(((.........)))...))...))))....((.(......)----.------)).....-- ( -27.80) >consensus GGGCCCUGCAUUGGGCUUAGUGUUAAGCUUAAUGCCGGGGCCAGACAUC_______CGACU_CCCGAUAACAGGAUGUCCAUACAACUACGGCUACAA__ .((((((((((((((((((....))))))))))).))))))).((((((.......((......)).......))))))..................... (-30.81 = -30.84 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:30 2006