Locus 3241

Sequence ID 3R_DroMel_CAF1
Location 8,653,482 – 8,653,591
Length 109
Max. P 0.529765
window5241

overview

Window 1

Location 8,653,482 – 8,653,591
Length 109
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.19
Mean single sequence MFE -33.10
Consensus MFE -20.81
Energy contribution -20.95
Covariance contribution 0.14
Combinations/Pair 1.07
Mean z-score -1.75
Structure conservation index 0.63
SVM decision value -0.01
SVM RNA-class probability 0.529765
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8653482 109 + 27905053
------AACGCCGCCCAUUUG----ACCACGCCCACAAUGCGUUACAAAUAAGCGUAUUAUG-GAGGCGCUUGUCCUGCGGAAUGGACAAAAGCAAAUCCUUGACACGCUGUGAUAAGGA
------...(((((.......----.....))(((.((((((((.......)))))))).))-).)))((((((((........)))))..)))...((((((.(((...))).)))))) ( -32.50)
>DroVir_CAF1 100757 110 + 1
-------CCGGCUCCACGU--ACAUGCCACGCCCACAACGCGUUACAAAUAAGCGUAUUAUG-GAGCCGCUUGUCCUAUGGUAUGGACAAAAGCAAAUCCUUGACACGCUGUGAUAAGGA
-------..((((((((((--.......)))......((((...........))))....))-)))))((((((((........)))))..)))...((((((.(((...))).)))))) ( -35.40)
>DroGri_CAF1 81025 112 + 1
-------ACGCCUCCAAGUUGAAAUGGCGCGCCCACGAAGCGUUACAAAUAAGCGUAUUAUG-GAUCCGGUUGUCCUAUGGAAUGGACAAAAGCAAAUCCUUGACACGCUGUGAUAAGGA
-------.....(((.........((((((.........))))))((....(((((.(((.(-(((.(..((((((........))))))..)...)))).))).))))).))....))) ( -30.20)
>DroWil_CAF1 103516 108 + 1
------AACAUCACUCCCUUG----GCCGCGCCCACAACGCGUUACAAAUAAGCGUAUUAUG-GAGCCGCUUGUCCUAUGGAAUGGACAA-AGCAAAUCCUUGACACGCUGUGAUAAGGA
------...(((((....(((----..((((.......))))...)))...(((((.(((.(-((...((((((((........)))).)-)))...))).))).))))))))))..... ( -33.70)
>DroMoj_CAF1 129429 103 + 1
-------CCUGCU----------GUGCCACGCCCACAGCGCGUUACAAAUAAGCGUAUUAUGGGAACCGCUUGUGCUCUGGCAUGGACAAAAGCAAAUCCUUGACACGCUGUGAUAAGGA
-------..((((----------.(((((.((((((((((.(((.(..((((.....))))..))))))).))))....))).))).))..))))..((((((.(((...))).)))))) ( -31.40)
>DroAna_CAF1 74825 115 + 1
AUCGGUAGAACCGCCCAUUUG----ACCACGCCCACAAUGCGUUACAAAUAAGCGUAUUAUG-GGGCCGCUUGUCCUGCGGAAUGGACAAAAGCAAAUCCUUGACACGCUGUGAUAAGGA
...((.....))((...((((----.(((..((((.((((((((.......)))))))).))-)).((((.......))))..))).)))).))...((((((.(((...))).)))))) ( -35.40)
>consensus
_______ACGCCUCCCAGUUG____GCCACGCCCACAACGCGUUACAAAUAAGCGUAUUAUG_GAGCCGCUUGUCCUAUGGAAUGGACAAAAGCAAAUCCUUGACACGCUGUGAUAAGGA
..........................((((((.......))))..((....(((((.(((.(.((...((((((((........)))))..)))...))).))).))))).))....)). (-20.81 = -20.95 +   0.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:28 2006