Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,653,115 – 8,653,207 |
Length | 92 |
Max. P | 0.772514 |
Location | 8,653,115 – 8,653,207 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 79.83 |
Mean single sequence MFE | -11.12 |
Consensus MFE | -6.91 |
Energy contribution | -6.77 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.09 |
Mean z-score | -1.85 |
Structure conservation index | 0.62 |
SVM decision value | 0.53 |
SVM RNA-class probability | 0.772514 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8653115 92 - 27905053 CA----CCAAACAAUCAACGCAAAUUUCACGGCAA-AACGUAAAAAUGCGUAAAUAAAUUUUAUGCACCCAAACACCCCCA----AAAAUGU--AUUUUCAUU ..----.............(((..(((.(((....-..))).))).((((((((.....))))))))..............----....)))--......... ( -10.60) >DroVir_CAF1 100455 89 - 1 AA----C--AACAAUCAACGCACAUUUCAUGACAA-AACGUAAAACUGCGUAAAUACAUUUGACGUAACCGU-UGG-CCGAG---AAGA-GUUGCCCUCUAU- ..----(--(((.....(((((..(((.(((....-..))).))).)))))...(((.......)))...))-)).-.....---.(((-(.....))))..- ( -12.10) >DroSim_CAF1 96267 91 - 1 CA----CCAAACAAUCAACGCAAAUUUCACGACAA-AACGUAAAAAUGCGUAAAUAAAUUUUAUGCACCCAAACACCGCCA----AAAA-GU--CUUUUCAUU ..----.............((...(((.(((....-..))).))).((((((((.....))))))))..........))..----....-..--......... ( -10.10) >DroEre_CAF1 93130 92 - 1 CA----CCAAACAAUCAACGCAAAUUUCACGACAA-AACGUAAAAAUGCGUAAAUAAAUUUUAUGCACCCAAACACCCCAA----AAAAUGU--CUGUUCGUU ..----...((((..((.......(((.(((....-..))).))).((((((((.....))))))))..............----....)).--.)))).... ( -10.40) >DroWil_CAF1 103163 94 - 1 CAGCGACCAAAUAAUCAACGCAAAUUUCACGACAAAAACGUAAAAAUGCGUAAAUAAAUUUUAUGAA----GACUCCCCAAGUCCAAAAUGU-----UUCGUU .(((((...........(((((..(((.(((.......))))))..)))))................----((((.....))))........-----.))))) ( -12.50) >DroYak_CAF1 85428 91 - 1 CA----CUAAACAAUCAACGCAAAUUUCACGACAA-AACGUAAAAAUGCGUAAAUAAAUUUUAUGCACCCAAACUCCCCAA-----AAAUAU--CUUUUGAUU ..----......((((((......(((.(((....-..))).))).((((((((.....))))))))..............-----......--...)))))) ( -11.00) >consensus CA____CCAAACAAUCAACGCAAAUUUCACGACAA_AACGUAAAAAUGCGUAAAUAAAUUUUAUGCACCCAAACACCCCAA____AAAAUGU__CUUUUCAUU .................(((((..(((.(((.......))))))..))))).................................................... ( -6.91 = -6.77 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:27 2006