Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,644,115 – 8,644,210 |
Length | 95 |
Max. P | 0.967709 |
Location | 8,644,115 – 8,644,210 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 88.35 |
Mean single sequence MFE | -24.57 |
Consensus MFE | -20.18 |
Energy contribution | -20.93 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.06 |
Mean z-score | -3.32 |
Structure conservation index | 0.82 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967709 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8644115 95 + 27905053 AUUUGCGCCUCCUUGUUGGCCAACCACUAGCUGUCAUCAGCUGGCCCCAAACCCCAUUUUACUUUAGGGGAAUCCCUCACUUCUUGGCCAUAUCA ................(((((((...(((((((....))))))).......((((...........)))).............)))))))..... ( -26.90) >DroSec_CAF1 71175 95 + 1 AUUUGCGCCUUCUUGUUGGCCAACCACUAGCUGUCAUCAGCUGGCCCCAAACCCCAUUUUACUCCAGGGGAAUCCCUCACUUCUUGGCCAUAUCA ................(((((((...(((((((....))))))).......((((...........)))).............)))))))..... ( -26.90) >DroSim_CAF1 86934 95 + 1 AUUUGCGCCUCCUUGUUGGCCAACCACUAGCUGUCAUCAGCUGGCCCCAAACCCCAUUUUACUCCAGGGGAAUCCCUCACUUCUUGGCCAUAUCA ................(((((((...(((((((....))))))).......((((...........)))).............)))))))..... ( -26.90) >DroEre_CAF1 83891 95 + 1 AUUUUCGCCUCCUUGUUGGCCAACCACUGGCUGUCAUCAGCUGGCCCCAAACCCCAUUUUACACCCGGGAAAUCCCUCACUUCUUGGCCAUAUCA ................(((((((...(..((((....))))..)......................(((....))).......)))))))..... ( -24.10) >DroYak_CAF1 75976 95 + 1 AUUGGCGCCUCCUUGUUGGCCAACCACUGGCUGUCAUCAGCUGGCCCCAAACCCCAUUUUACUCCCGGGAAAUCCCUCACUUCUUGGCCAUAUCA ................(((((((...(..((((....))))..)......................(((....))).......)))))))..... ( -24.10) >DroAna_CAF1 66287 83 + 1 AUUUGCGCCUUCCUGUUGGCCAACCGCUGGCUGUCAUC-GCU--CCUCAUCCCCCGACUUAUG---------GCCCUCACUUCUUGGCCAUAUCA ....(((.......((..((.....))..))......)-)).--...........((..((((---------(((..........))))))))). ( -18.52) >consensus AUUUGCGCCUCCUUGUUGGCCAACCACUAGCUGUCAUCAGCUGGCCCCAAACCCCAUUUUACUCCAGGGGAAUCCCUCACUUCUUGGCCAUAUCA ................(((((((...(((((((....)))))))......................(((....))).......)))))))..... (-20.18 = -20.93 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:21 2006