| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,643,789 – 8,643,895 |
| Length | 106 |
| Max. P | 0.597502 |
| Location | 8,643,789 – 8,643,895 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.05 |
| Mean single sequence MFE | -26.68 |
| Consensus MFE | -18.76 |
| Energy contribution | -18.88 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.597502 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8643789 106 + 27905053 UAAGCUAAUUUUUGUUUA-------------A-GAAAAUUCAGCGGUAAGCGCAAAGCUUUCUGUAUGGUUACCAACAGCUCCUAGAGCAAAAUGAGCUUUACUCGCCAAGAAAGCUACU ...((((((((((.....-------------.-))))))).)))...........((((((((...((((........((((...)))).....(((.....)))))))))))))))... ( -25.50) >DroSec_CAF1 70846 106 + 1 UAAGCUAAUUUUUGUUUA-------------A-GAAAAUUCAGCGGUAAGCGCAAAGCUUUUUGUAUGGUUACCAACAGGUCCUAAAGCAAAAUGAGCUUUACUCGCCAAGAAAGCUACU ...((((((((((.....-------------.-))))))).)))((..((...((((((((((((..((..(((....)))))....)))))..))))))).))..))............ ( -23.50) >DroSim_CAF1 86605 106 + 1 UAAGCUAAUUUUUGUUUA-------------A-GAAAAUUCGGCGGUAAGCGCAAAGCUUUUUGUAUGGUUACCAACAGGUCCUAGAGCAAAAGGAGCUUUACUCGCCAAGAAAGCUACU ..(((((((((((.....-------------.-))))))).(((((((((.((....((((((((.(((..(((....))).)))..)))))))).))))))).)))).....))))... ( -29.30) >DroEre_CAF1 83548 120 + 1 UAAGCUAAUUAUCGUUUAUACUACUUCUAAAAGUAUAGUCCAGCGGUAAGCGCAAAGCUUUCUGUGUGGUUUCCAACAGGUCCUUGAGCAGAAUGAGCUUUACUCGCCAAUAAAGCUAUG ..((((..((((((((((((((.........))))))....))))))))(((.((((((((((((..((...((....)).))....)))))..)))))))...)))......))))... ( -31.40) >DroYak_CAF1 75648 106 + 1 UUGGUUUUU--------------UUUUUGUAUGUAUAGUCCAGUGGUAAGCGCAAAGCUUUCUGUGUGGUUUCCAACAGGUCCUAGAGCAAAAUGAGCUUUACUCGCCAAGAAAGCUAUU .((((((((--------------((......(((.....((((..(.((((.....)))).)..).)))......)))(((..((((((.......))))))...))))))))))))).. ( -23.70) >consensus UAAGCUAAUUUUUGUUUA_____________A_GAAAAUUCAGCGGUAAGCGCAAAGCUUUCUGUAUGGUUACCAACAGGUCCUAGAGCAAAAUGAGCUUUACUCGCCAAGAAAGCUACU ..........................................(((.....)))..((((((((((.(((...))))).(((..((((((.......))))))...))).))))))))... (-18.76 = -18.88 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:20 2006