Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,632,325 – 8,632,429 |
Length | 104 |
Max. P | 0.950109 |
Location | 8,632,325 – 8,632,429 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 93.67 |
Mean single sequence MFE | -23.57 |
Consensus MFE | -21.17 |
Energy contribution | -21.50 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.19 |
Structure conservation index | 0.90 |
SVM decision value | 0.17 |
SVM RNA-class probability | 0.616499 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8632325 104 + 27905053 UUAAACGAGCAUCCGAAAGGAUUUUGUGUACAAUUUCCGUUUUAUGACUCUCCAGAGUGGCAAUAAAUCUCACACAAAACUAUUUCCGUUGCAUUCGAGCUGCU------------- .......((((.(((((.(((..(((....)))..)))........((((....)))).(((((.......................))))).)))).).))))------------- ( -19.30) >DroVir_CAF1 75063 103 + 1 UUAAACGAGCAUCCGAAAGGAUUUUGUGUACAAUUUCCGUUUUAUGACUCUCCAGAGUGGUAAUAAAUCUCACACAAAACUAUUUCCGUUGCAUUGGAGCUGC-------------- .......(((.(((....)))((((((((...((((.....((((.((((....)))).)))).))))...)))))))).....((((......)))))))..-------------- ( -25.20) >DroGri_CAF1 58571 103 + 1 UUAAACGAGCAUCCGAAAGGAUUUUGUGUACAAUUUCCGUUUUAUGACUCUCCAGAGUGGUAAUAAAUCUCACACAAAACUAUUUCCGUUGCAUUGGAGCUGC-------------- .......(((.(((....)))((((((((...((((.....((((.((((....)))).)))).))))...)))))))).....((((......)))))))..-------------- ( -25.20) >DroWil_CAF1 83425 105 + 1 UUAAACGAGCAUCCGAAAGGAUUUUGUGUACAAUUUCCGUUUUAUGACUCUCUAGAGUGGUAAUAAAUCUCACACAAAACUAUUUCCGUUGCAUUCGAGCUGCUU------------ ......((((((((....)))((((((((...((((.....((((.((((....)))).)))).))))...))))))))...........((......)))))))------------ ( -23.50) >DroMoj_CAF1 101808 103 + 1 UUAAACGAGCAUCCGAAAGGAUUUUGUGUACAAUUUCCGUUUUAUGACUCUCUAGAGUGGUAAUAAAUCUCACACAAAACUAUUUCCGUUGCAUUGGAGCUGC-------------- .......(((.(((....)))((((((((...((((.....((((.((((....)))).)))).))))...)))))))).....((((......)))))))..-------------- ( -25.20) >DroPer_CAF1 67299 117 + 1 UUAAACGAGCAUCCGAAAGGAUUUUGUGUACAAUUUCCGUUUUAUGACUCUCCAGAGUGGCAAUAAAUCUCACACAAAACUAUUUCCGUUGCAUUCGAGCUGCUGCUGCUGCCGCCG ........((((((....)))((((((((.........(((....)))......(((...........)))))))))))..........)))...((.((.((....)).))))... ( -23.00) >consensus UUAAACGAGCAUCCGAAAGGAUUUUGUGUACAAUUUCCGUUUUAUGACUCUCCAGAGUGGUAAUAAAUCUCACACAAAACUAUUUCCGUUGCAUUCGAGCUGC______________ ...((((....(((....)))((((((((...((((.....((((.((((....)))).)))).))))...)))))))).......))))((......))................. (-21.17 = -21.50 + 0.33)
Location | 8,632,325 – 8,632,429 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 117 |
Reading direction | reverse |
Mean pairwise identity | 93.67 |
Mean single sequence MFE | -25.05 |
Consensus MFE | -24.42 |
Energy contribution | -24.20 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -1.17 |
Structure conservation index | 0.97 |
SVM decision value | 1.40 |
SVM RNA-class probability | 0.950109 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8632325 104 - 27905053 -------------AGCAGCUCGAAUGCAACGGAAAUAGUUUUGUGUGAGAUUUAUUGCCACUCUGGAGAGUCAUAAAACGGAAAUUGUACACAAAAUCCUUUCGGAUGCUCGUUUAA -------------((((((......))..(.((((..((((((((((.(((((.(((..((((....))))..))).....))))).))))))))))..)))).).))))....... ( -24.40) >DroVir_CAF1 75063 103 - 1 --------------GCAGCUCCAAUGCAACGGAAAUAGUUUUGUGUGAGAUUUAUUACCACUCUGGAGAGUCAUAAAACGGAAAUUGUACACAAAAUCCUUUCGGAUGCUCGUUUAA --------------(((((......))..(.((((..((((((((((.(((((.(((..((((....))))..))).....))))).))))))))))..)))).).)))........ ( -24.20) >DroGri_CAF1 58571 103 - 1 --------------GCAGCUCCAAUGCAACGGAAAUAGUUUUGUGUGAGAUUUAUUACCACUCUGGAGAGUCAUAAAACGGAAAUUGUACACAAAAUCCUUUCGGAUGCUCGUUUAA --------------(((((......))..(.((((..((((((((((.(((((.(((..((((....))))..))).....))))).))))))))))..)))).).)))........ ( -24.20) >DroWil_CAF1 83425 105 - 1 ------------AAGCAGCUCGAAUGCAACGGAAAUAGUUUUGUGUGAGAUUUAUUACCACUCUAGAGAGUCAUAAAACGGAAAUUGUACACAAAAUCCUUUCGGAUGCUCGUUUAA ------------.((((((......))..(.((((..((((((((((.(((((.(((..((((....))))..))).....))))).))))))))))..)))).).))))....... ( -25.00) >DroMoj_CAF1 101808 103 - 1 --------------GCAGCUCCAAUGCAACGGAAAUAGUUUUGUGUGAGAUUUAUUACCACUCUAGAGAGUCAUAAAACGGAAAUUGUACACAAAAUCCUUUCGGAUGCUCGUUUAA --------------(((((......))..(.((((..((((((((((.(((((.(((..((((....))))..))).....))))).))))))))))..)))).).)))........ ( -24.20) >DroPer_CAF1 67299 117 - 1 CGGCGGCAGCAGCAGCAGCUCGAAUGCAACGGAAAUAGUUUUGUGUGAGAUUUAUUGCCACUCUGGAGAGUCAUAAAACGGAAAUUGUACACAAAAUCCUUUCGGAUGCUCGUUUAA ((((.((.......)).)).))...(((.(.((((..((((((((((.(((((.(((..((((....))))..))).....))))).))))))))))..)))).).)))........ ( -28.30) >consensus ______________GCAGCUCCAAUGCAACGGAAAUAGUUUUGUGUGAGAUUUAUUACCACUCUGGAGAGUCAUAAAACGGAAAUUGUACACAAAAUCCUUUCGGAUGCUCGUUUAA ..............(((((......))..(.((((..((((((((((.(((((.(((..((((....))))..))).....))))).))))))))))..)))).).)))........ (-24.42 = -24.20 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:18 2006