| Sequence ID | 3R_DroMel_CAF1 |
|---|---|
| Location | 8,629,966 – 8,630,069 |
| Length | 103 |
| Max. P | 0.976266 |
| Location | 8,629,966 – 8,630,069 |
|---|---|
| Length | 103 |
| Sequences | 5 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 92.23 |
| Mean single sequence MFE | -19.38 |
| Consensus MFE | -16.94 |
| Energy contribution | -17.42 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.78 |
| Structure conservation index | 0.87 |
| SVM decision value | 1.77 |
| SVM RNA-class probability | 0.976266 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8629966 103 + 27905053 GUUCCCUCAGUGCAAAAUAGCGAAAUGCUAAGUGGAAAGCCAAACGCAAAGUGCCGCAGCGCACUCGAAAAUGAUGGCAAACAAAUAAGAAGUAAAUAAAUUC (((((.(((.(((....((((.....))))..(((....)))...))).(((((......)))))......))).))..)))..................... ( -17.30) >DroSec_CAF1 57294 103 + 1 GUUCCAUCAGCGCAAAAUAGCGAAAUGCUAAGUGGAAAGCCAAACGCAAAGUGUCGCAGCGAACUCGAAAACGAUGGCAAACAAAUAAAAAGUAAAUAAAUUC .((((((((.(((......)))...))....)))))).((((..(((...........)))...(((....)))))))......................... ( -18.80) >DroSim_CAF1 72871 103 + 1 GUUCCAUCAGCGCAAAAUAGCGAAAUGCUAAGUGGAAAGCCAAACGCAAAGUGCCGCAGCGCACUCGAAAACGAUGGCAAACAAAUAAAAAGUAAAUAAAUUC ((((((((.((((....((((.....)))).((((...((.....))......)))).))))....(....))))))..)))..................... ( -21.60) >DroEre_CAF1 69555 102 + 1 GUUCCAUCAGCGCAAAAUAACGAAAUGCUAAGUGGAAAGCCAAACGCAAAGUGCCACAACGCACUGAAAAAUGAUG-CAAACAAAUAAGAAAUAAAUACAUUC (((.((((((((((...........)))....(((....)))...))..(((((......)))))......)))))-..)))..................... ( -16.30) >DroYak_CAF1 61882 103 + 1 GUUCCAUCAGCGCAAAAUAGCGAAAUGCUAAGUGGAAAGCCAAACGCAAAGUGCCACAGCGCACUGAAAAAUGAUGGCAAACAAAUACAAAAUAUAUCAAUUC (((((((((((((....((((.....)))).((((...((.....))......)))).))))..(....).))))))..)))..................... ( -22.90) >consensus GUUCCAUCAGCGCAAAAUAGCGAAAUGCUAAGUGGAAAGCCAAACGCAAAGUGCCGCAGCGCACUCGAAAAUGAUGGCAAACAAAUAAAAAGUAAAUAAAUUC ((((((((.(((.....((((.....))))..(((....)))..)))..(((((......))))).......)))))..)))..................... (-16.94 = -17.42 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:16 2006