Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,244,624 – 1,244,740 |
Length | 116 |
Max. P | 0.586990 |
Location | 1,244,624 – 1,244,740 |
---|---|
Length | 116 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 82.91 |
Mean single sequence MFE | -34.12 |
Consensus MFE | -20.07 |
Energy contribution | -21.43 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.19 |
Mean z-score | -2.44 |
Structure conservation index | 0.59 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586990 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1244624 116 + 27905053 AAUGUCCUUGUAUGCUAAACCAAAGCCUCUUAGCAGCUUCCGAUGAUAAAACAUUUUAAGCUGAUUCAAUGCGUUCAAUUUCAAUGCAAUUGAAUCGACUUCGGGUUUGGUU--GGCG .............(((((.(((((.((.......(((((..((((......))))..)))))(((((((((((((.......))))).))))))))......)).)))))))--))). ( -34.80) >DroSec_CAF1 18477 116 + 1 AAUGUCCUUGUAAGCUAAUCCAAAGCCUCUUAGCAGCUUUCGAUGGUAGAACAUUUUAAGCUGAUUCAAUGCGUUCAAUUUCAACGCAAUUGAAUCGACUUCGGGCUUGGCU--GGCG .............((((..((((.((((...((((((((..((((......))))..)))))(((((((((((((.......))))).))))))))).))..)))))))).)--))). ( -37.50) >DroSim_CAF1 18807 116 + 1 AAUGUCCUUGUAUGCUAAACCAAAGCCUCUUAGCAGCUUUCGAUGGUAGAACAUUUUAAGCUGAUUCAAUGCGUUCAAUUUCAAUGCAAUUGAAUCGACUUCGGGCUUGGCU--GGCG .............((((..((((.((((...((((((((..((((......))))..)))))(((((((((((((.......))))).))))))))).))..)))))))).)--))). ( -35.40) >DroEre_CAF1 18805 116 + 1 AAGGCCUUUGUAUGCUAAACCAAAGCCUCUUAGGAGCUUAGGAUGGUAGAACAUUUUAAGCUGAUUCAAUGCGUUCAAUUUCAAUGCAAUUGACCCGAGUUCCGGCUUGGCU--GGCA ............(((((..((((.(((.((..(((((((((((((......)))))))))))...((((((((((.......))))).)))))))..))....))))))).)--)))) ( -36.60) >DroYak_CAF1 24671 116 + 1 AACGCCUUUGUAUGCCAAACCAAAGCCUCUUAGCAACUUUGGAUGGUAGAACAUUUUAAGCUGAUUCAAUGCGUUCAAUUUCAAUGCAAUUGACCCGAGUUCGGGUUUGGCU--AGGA ....(((.(((.(((((..((((((...........)))))).)))))..))).....(((..(.((((((((((.......))))).)))))((((....)))).)..)))--))). ( -31.60) >DroAna_CAF1 19514 117 + 1 ACAUCCAUUGAGCAGUAAAGCAAAGCCUCUUAAGAGCUUUCAAUCGUAUAACGUUUUAAGCUGCUGCAUUGCGUUGAAUUUGAAUGCAAUCGAUCCAAC-UCGGGAUGGGACACACAA .(((((.....(((((..((((((((.((....)))))))....((.....))......))))))))((((((((.......))))))))(((......-)))))))).......... ( -28.80) >consensus AAUGCCCUUGUAUGCUAAACCAAAGCCUCUUAGCAGCUUUCGAUGGUAGAACAUUUUAAGCUGAUUCAAUGCGUUCAAUUUCAAUGCAAUUGAACCGACUUCGGGCUUGGCU__GGCA .............(((...((((.((((.....((((((..((((......))))..))))))..((((((((((.......))))).))))).........))))))))....))). (-20.07 = -21.43 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:25 2006