Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,614,323 – 8,614,415 |
Length | 92 |
Max. P | 0.992399 |
Location | 8,614,323 – 8,614,415 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 99.13 |
Mean single sequence MFE | -23.89 |
Consensus MFE | -22.82 |
Energy contribution | -22.82 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.02 |
Structure conservation index | 0.96 |
SVM decision value | 2.33 |
SVM RNA-class probability | 0.992399 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8614323 92 + 27905053 GCUGUGAGUAAAGUAAAUACCAGCUGAAUGCAACAUCGGGACAAAGGCGGCUGGAAAAGAAAAGACAGAGACACUUUCCCAGAUGGACAGCA (((((..(((.(((........)))...)))..((((((((..(((....(((............))).....))))))).)))).))))). ( -22.80) >DroSec_CAF1 41880 92 + 1 GCUGUGAGUAAAGUAAAUACCAGCUGAAUGCAACAUCGGGACAAAGGCGGCUGGGAAAGAAAAGACAGAGACACUUUCCCAGAUGGACAGCA (((((..((..........((.(((...(((........).))..)))))(((((((((..............)))))))))))..))))). ( -23.64) >DroSim_CAF1 55897 92 + 1 GCUGUGAGUAAAGUAAAUACCAGCUGAAUGCAACAUCGGGACAAAGGCGGCUGGGAAAGAAAAGACAGAGACACUUUCCCAGAUGGACAGCA (((((..((..........((.(((...(((........).))..)))))(((((((((..............)))))))))))..))))). ( -23.64) >DroEre_CAF1 53655 92 + 1 GCUGUGAGUAAAGUAAAUACCGGCUGAAUGCAACAUCGGGACAAAGGCGGCUGGGAAAGAAAAGACAGAGACACUUUCCCAGAUGGACAGCA (((((..((..........(((.((...(((........).)).)).)))(((((((((..............)))))))))))..))))). ( -25.74) >DroYak_CAF1 46000 92 + 1 GCUGUGAGUAAAGUAAAUACCAGCUGAAUGCAACAUCGGGACAAAGGCGGCUGGGAAAGAAAAGACAGAGACACUUUCCCAGAUGGACAGCA (((((..((..........((.(((...(((........).))..)))))(((((((((..............)))))))))))..))))). ( -23.64) >consensus GCUGUGAGUAAAGUAAAUACCAGCUGAAUGCAACAUCGGGACAAAGGCGGCUGGGAAAGAAAAGACAGAGACACUUUCCCAGAUGGACAGCA (((((..(((.(((........)))...)))..((((((((..(((....(((............))).....))))))).)))).))))). (-22.82 = -22.82 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:08 2006