Locus 3228

Sequence ID 3R_DroMel_CAF1
Location 8,606,319 – 8,606,415
Length 96
Max. P 0.836099
window5219

overview

Window 9

Location 8,606,319 – 8,606,415
Length 96
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 76.12
Mean single sequence MFE -18.40
Consensus MFE -14.23
Energy contribution -13.98
Covariance contribution -0.25
Combinations/Pair 1.06
Mean z-score -1.11
Structure conservation index 0.77
SVM decision value 0.73
SVM RNA-class probability 0.836099
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8606319 96 + 27905053
CAAAUUUUUGAUGGUUUAAUUUUGUGGAAAAUAAGUUAAGCCGCUGCUGCGGCGCCCAUAUAACACUCACACUCGCACACACACAC----------ACGACCACAA
.......(((.(((((......((((.............(((((....)))))((...................))...))))...----------..)))))))) ( -19.01)
>DroPse_CAF1 41563 91 + 1
CAAAUUUUUGAUGGUUUAAUUUUGUGGAAAAUAAGUUAAGCCGCUGCUGUGGCUGCCAUAUAACAUACAU---CACAUACUCG--U----------GCAAGCAGGG
........(((((.........(((((...........((((((....)))))).))))).......)))---))......(.--(----------(....)).). ( -18.99)
>DroEre_CAF1 45228 84 + 1
CAAAUUUUUGAUGGUUUAAUUUUGUGGAAAAUAAGUUAAGCCGCUGCUGCGGCGCCCAUAUAACACUCACAC----------------------ACACAACCACAA
.......(((.(((((......(((((............(((((....))))).............))))).----------------------....)))))))) ( -18.31)
>DroYak_CAF1 37344 84 + 1
CAAAUUUUUGAUGGUUUAAUUUUGUGGAAAAUAAGUUAAGCCGCUGCUGUGGCGCCCAUAUAACACUCACAC----------------------ACACAACCACAA
.......(((.(((((......(((((............(((((....))))).............))))).----------------------....)))))))) ( -16.41)
>DroAna_CAF1 31358 95 + 1
CAAAUUUUUGAUGGUUUAAUUUUGUGGAAAAUAAGUUAAGCCGCUACUGCGGCGACCAUAUAACACACACACUCGCACUCACGCCAUUCCAAAUA-----------
......((((((((((((((((..(....)..)))))).(((((....)))))))))))...............((......)).....))))..----------- ( -18.70)
>DroPer_CAF1 39175 91 + 1
CAAAUUUUUGAUGGUUUAAUUUUGUGGAAAAUAAGUUAAGCCGCUGCUGUGGCUGCCAUAUAACAUACAU---CACAUACUCG--U----------GCAAGCAGGG
........(((((.........(((((...........((((((....)))))).))))).......)))---))......(.--(----------(....)).). ( -18.99)
>consensus
CAAAUUUUUGAUGGUUUAAUUUUGUGGAAAAUAAGUUAAGCCGCUGCUGCGGCGCCCAUAUAACACACACAC_C_CA_AC_CG_____________ACAACCACAA
..........((((.(((((((.((.....)))))))))(((((....)))))..))))............................................... (-14.23 = -13.98 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:07 2006