Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,598,987 – 8,599,085 |
Length | 98 |
Max. P | 0.852420 |
Location | 8,598,987 – 8,599,085 |
---|---|
Length | 98 |
Sequences | 6 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 77.59 |
Mean single sequence MFE | -29.98 |
Consensus MFE | -14.95 |
Energy contribution | -15.18 |
Covariance contribution | 0.23 |
Combinations/Pair | 1.31 |
Mean z-score | -2.22 |
Structure conservation index | 0.50 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852420 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8598987 98 - 27905053 CCUUUCAUCCGUCGC-CGAGGGUAGCUGCCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGUUGCUGCAGGAAACUGC-CC-AGCAAGCGGAAACGG ........((((..(-((...((((((((..(((((............)))))..))))))))..(((((((((....))))-..-))))).)))..)))) ( -35.80) >DroVir_CAF1 33164 90 - 1 CCUUCUGUUUUCCGCCCAUCAGCGGCUACUAUAAAAGCUUCAUAAACAUUUUACAGC--UUGCAGUUGUUGCAGGAAACUGCGCC-AGGCC-CG------- ...((((....((((......))))...........((..............(((((--.....))))).((((....)))))))-)))..-..------- ( -21.10) >DroPse_CAF1 33033 97 - 1 CCUGAGCUCCG-AGC-CGAGGGCAGCUGCCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGCUGCAGCAGGAAACAGCGCC-AGCAA-CGGAAACAG (((..((....-.))-..)))((((((((..(((((............)))))..)))))))).((((..((.(....).))..)-)))..-.(....).. ( -31.80) >DroWil_CAF1 49258 89 - 1 UGUUG--G-----CC-CGCGGGUGGCAGCCAUAAAAGCUUCAUAAACAUUUUACAGC--UUGCAGUUGUUGCAGGAAACUGCACC-AGCAA-CGGAAACAG ((((.--.-----((-.((.(((....)))....(((((...............)))--)))).((((.(((((....))))).)-)))..-.)).)))). ( -26.96) >DroYak_CAF1 29896 98 - 1 CCUUUUAUCCGUCGC-CUAGGGUAGCCACCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGUUGCUGCAGGAAACUGC-CC-AGCAAGCGGAAACGG ........((((..(-(...(((....)))......((.................((....))..(((((((((....))))-..-)))))))))..)))) ( -27.00) >DroAna_CAF1 24435 99 - 1 CGGCUCUUGCCGCGC-CGAGGGCAGCUGCCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGUUGCUGCAGGAAACUGC-CCUAGCAAACGGAAACAG ((((....))))..(-((...((((((((..(((((............)))))..))))))))..(((((((((....))))-...))))).)))...... ( -37.20) >consensus CCUUUCAUCCG_CGC_CGAGGGCAGCUGCCAUAAAAGCAUCAUAAACAUUUUACAGCAGUUGCAGUUGCUGCAGGAAACUGC_CC_AGCAA_CGGAAACAG ....................(((((((((.......((.................))....)))))))))((((....))))...........(....).. (-14.95 = -15.18 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:05 2006