Locus 3225

Sequence ID 3R_DroMel_CAF1
Location 8,594,954 – 8,595,048
Length 94
Max. P 0.536783
window5216

overview

Window 6

Location 8,594,954 – 8,595,048
Length 94
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 81.68
Mean single sequence MFE -29.77
Consensus MFE -18.51
Energy contribution -18.90
Covariance contribution 0.39
Combinations/Pair 1.11
Mean z-score -1.69
Structure conservation index 0.62
SVM decision value 0.01
SVM RNA-class probability 0.536783
Prediction RNA

Download alignment: ClustalW | MAF

>3R_DroMel_CAF1 8594954 94 - 27905053
UAGCCUGGUC-UGGUCCGGUGUGGUCUCCGGUUUC--UGGACCAAUAUGUGCCAUGAAUAAUGGCCGGGCAAAUUGCUCAGCAGCUUUCCAGCUAAC
((((.(((((-..(.((((.(....).))))...)--..)))))...((((((((.....))))).((((.....)))).)))........)))).. ( -34.80)
>DroPse_CAF1 29712 91 - 1
CAGCUUGGUUCCUGACCGGUG------CCGGUGCCGGUGGCUCAAUAUGUGCCAUGAAUAAUGGCCGGGCAAAUUGCUCAGCAGCUUUCCAGCUAAC
.((((.((((.((((.((.((------((.(.(((((((((.(.....).)))))......))))).))))...)).)))).))))....))))... ( -31.20)
>DroSim_CAF1 35389 84 - 1
UAGCCUGGUC-UG----------GUCUCCGGUUUC--UGGACCAAUAUGUGCCAUGAAUAAUGGCCGGGCAAAUUGCUCAGUAGCUUUCCAGCUAAC
..((((((((-..----------(..........)--..)))).....(.(((((.....))))))))))...........(((((....))))).. ( -26.20)
>DroEre_CAF1 33846 84 - 1
UAGCCUGGCC-UG----------GUCUCGGGUUCC--UGGACCAAUAUGUGCCAUGAAUAAUGGCCGGGCAAAUUGCUCAGCAGCUUUCCAGCUAAC
..((((((((-((----------(((.(((....)--))))))).((((...))))......))))))))............((((....))))... ( -31.10)
>DroYak_CAF1 24827 84 - 1
UAGCCGGGUA-UG----------GUCUCCGGUUUC--UGGACCAAUAUGUGCCAUGAAUAAUGGCCGGGCAAAUUGCUCAGCAGCUUUCCAGCUAAC
.(((((((..-..----------...))))))).(--((((......((((((((.....))))).((((.....)))).)))....)))))..... ( -26.60)
>DroPer_CAF1 27284 85 - 1
CAGCUUGGUCCCUGACCGGUG------CCGGUGC------CUCAAUAUGUGCCAUGAAUAAUGGCCGGGCAAAUUGCUCAGCAGCUUUCGAGCUAAC
.(((((((...(((((((...------.))))..------........(.(((((.....))))))((((.....))))..)))...)))))))... ( -28.70)
>consensus
UAGCCUGGUC_UG__________GUCUCCGGUUCC__UGGACCAAUAUGUGCCAUGAAUAAUGGCCGGGCAAAUUGCUCAGCAGCUUUCCAGCUAAC
..(((((......................((((......)))).......(((((.....))))))))))............((((....))))... (-18.51 = -18.90 +   0.39)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:56:04 2006