Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,586,567 – 8,586,661 |
Length | 94 |
Max. P | 0.999795 |
Location | 8,586,567 – 8,586,661 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 95 |
Reading direction | forward |
Mean pairwise identity | 88.50 |
Mean single sequence MFE | -15.31 |
Consensus MFE | -13.46 |
Energy contribution | -13.26 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.09 |
Mean z-score | -3.20 |
Structure conservation index | 0.88 |
SVM decision value | 4.10 |
SVM RNA-class probability | 0.999795 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8586567 94 + 27905053 CAUUGGACACUUUUGCAAAACUAAUAACAAAAUAUUAAGUUUACACAAAUUCGAGCCAAAAAAAAAAAAAAAAAAUAGGUCGAGCAAGAGGUA-A ......((.(((((((.(((((((((......)))).)))))........((((.((....................))))))))))))))).-. ( -15.95) >DroSec_CAF1 14116 92 + 1 CAUUGGACACUUUUGCAAAACUAAUAACAAAAUAUUAAGUUUACACAAAUUCGAGCCAAAAAAAAAAAAAAAAA--UGGUCGAGCAAGAGGUA-A ......((.(((((((.(((((((((......)))).)))))........((((.(((................--)))))))))))))))).-. ( -17.09) >DroSim_CAF1 26908 87 + 1 CAUUGGACACUUUUGCAAAACUAAUAACAAAAUAUUAAGUUUACACAAAUUCGAGCCAAAAAAAAAAAA-------AGGUCGAGCAAGAGGUA-A ......((.(((((((.(((((((((......)))).)))))........((((.((............-------.))))))))))))))).-. ( -16.42) >DroEre_CAF1 25850 84 + 1 CAUUGGACACUUUUGCAAAACUAAUAACAAAAUAUUAAGUUUACACAAAUUCGAGUAAAAAA----AGA-------AGGUCAAGCAAGAGGUAGA ......((.(((((((.(((((((((......)))).)))))..((...(((..........----.))-------).))...)))))))))... ( -12.10) >DroYak_CAF1 16338 80 + 1 CAUUGGACACUUUUGCAAAACUAAUAACAAAAUAUUAAGUUUACACAAAUUCGAGUAAAAAA--------------AAGUCGAGCAAGAGGUA-A ......((.(((((((.(((((((((......)))).)))))........((((.(......--------------.).))))))))))))).-. ( -15.00) >consensus CAUUGGACACUUUUGCAAAACUAAUAACAAAAUAUUAAGUUUACACAAAUUCGAGCCAAAAAAAAAAAA_______AGGUCGAGCAAGAGGUA_A ......((.(((((((.(((((((((......)))).)))))........((((.(.....................).)))))))))))))... (-13.46 = -13.26 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:59 2006