Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,585,405 – 8,585,505 |
Length | 100 |
Max. P | 0.745643 |
Location | 8,585,405 – 8,585,505 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 89.77 |
Mean single sequence MFE | -16.50 |
Consensus MFE | -14.26 |
Energy contribution | -14.45 |
Covariance contribution | 0.19 |
Combinations/Pair | 1.07 |
Mean z-score | -1.70 |
Structure conservation index | 0.86 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745643 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8585405 100 + 27905053 GGCGUAUACGCAAUGCAAAUAUUCCGCAAUGCAUUGUUUAUGCUCCUGUUUCGCUUAUACUUUUU-CACUCAAAUAUUUGUUCAUUUUUUCC----A--UCUUUUG--U ((.(((((.((((((((............)))))))).))))).))...................-..........................----.--.......--. ( -16.50) >DroSec_CAF1 12965 100 + 1 GGCGUAUACGCAAUGCAAAUAUUCCGCAAUGCAUUGUUUAUGCUCCUGUUUCGCUUAUACUUUUU-CACUCAAAUAUUUGUUCAUUUUUUCC----A--UCUUUUG--U ((.(((((.((((((((............)))))))).))))).))...................-..........................----.--.......--. ( -16.50) >DroSim_CAF1 25234 100 + 1 GGCGUAUACGCAAUGCAAAUAUUCCGCAAUGCAUUGUUUAUGCUCCUGUUUCGCUUAUACUUUUU-CACUCAAAUAUUUGUUCAUUUUUUCC----A--UCUUUUG--U ((.(((((.((((((((............)))))))).))))).))...................-..........................----.--.......--. ( -16.50) >DroEre_CAF1 24663 100 + 1 GGCGUAUACGCAAUGCAAAUAUUCCGCAAUGCAUUGUUUAUGCUCCUGUUUCGCUUAUACUUUUU-CACUCAAAUAUUUGUUCUUUUUUUCC----A--UCUUUUG--C ((.(((((.((((((((............)))))))).))))).))...................-..........................----.--.......--. ( -16.50) >DroYak_CAF1 15220 100 + 1 GGCGUAUACGCAAUGCAAAUAUUCCGCAAUGCAUUGUUUAUGCUCCUGUUUCGCUUAUACUUUUU-CACUCAAAUAUUUGUUCUUCUUUUCC----A--UCUUUUG--U ((.(((((.((((((((............)))))))).))))).))...................-..........................----.--.......--. ( -16.50) >DroAna_CAF1 11925 109 + 1 GGCGUAGACGCAAUGCAAAUAUUCAGAAAUGCAUUGUUUAUGUCCAUGUUUUGUUUAUACUCUUUCCGCUUCCAUAUUUUUCCAUUUCAUCUUAGCAGGUUUUUUGGUU ((((.(((.((((((((............)))))))).((((..((.....))..)))).)))...))))...........(((....((((....))))....))).. ( -16.50) >consensus GGCGUAUACGCAAUGCAAAUAUUCCGCAAUGCAUUGUUUAUGCUCCUGUUUCGCUUAUACUUUUU_CACUCAAAUAUUUGUUCAUUUUUUCC____A__UCUUUUG__U ((.(((((.((((((((............)))))))).))))).))............................................................... (-14.26 = -14.45 + 0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:58 2006