Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 1,243,990 – 1,244,081 |
Length | 91 |
Max. P | 0.593539 |
Location | 1,243,990 – 1,244,081 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 82.35 |
Mean single sequence MFE | -23.93 |
Consensus MFE | -17.06 |
Energy contribution | -16.62 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.26 |
Mean z-score | -1.59 |
Structure conservation index | 0.71 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.593539 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 1243990 91 - 27905053 AGGGGAUUCCCCUUACUAACAGCCUUGCUAACACCACGGCUCUGAAUUAAAUGCACUUU-----CAGGGGUUUUCCUGUUUGCAACUAGCAUGCCA .(((((..((((........((((.((.......)).)))).((((...........))-----))))))..)))))((.(((.....))).)).. ( -23.20) >DroSec_CAF1 17831 91 - 1 AGGGGAUUCCCCUUACUAACAGCCUUGCUAACAGCCCUGCUCUGAAUUAAUUGCACUUU-----CAGGGGUUUUCCUGUUUGCAACUAGCAUGCCA (((((...)))))........((.((((.(((((.....(((((((...........))-----)))))......))))).))))...))...... ( -22.90) >DroSim_CAF1 18150 91 - 1 AGGGGAUUCCUCUUACUAACAGCCUUGCUAACUGCACGGCUCUGAAUUAAUUGCACUUU-----CAGGGGUUUUCCUGUUUGCAACUAGCAUGCCA .(((((..(((.........((((.(((.....))).))))(((((...........))-----))))))..)))))((.(((.....))).)).. ( -25.40) >DroEre_CAF1 18193 83 - 1 AGGGAAUUCCCCU------------UGCGAACAGCACGGUUCUGAAUCAAUUGCACUUUAAUUGCAGGGGUUUUCCUGCUUGCAGGUGG-AUGUCA ...((..(((.((------------((((...((((.((....(((((..(((((.......))))).))))).)))))))))))).))-)..)). ( -24.20) >consensus AGGGGAUUCCCCUUACUAACAGCCUUGCUAACAGCACGGCUCUGAAUUAAUUGCACUUU_____CAGGGGUUUUCCUGUUUGCAACUAGCAUGCCA .(((((..(((((.............((.....))...((............))...........)))))..)))))((.(((.....))).)).. (-17.06 = -16.62 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:40:24 2006