Sequence ID | 3R_DroMel_CAF1 |
---|---|
Location | 8,584,640 – 8,584,733 |
Length | 93 |
Max. P | 0.871999 |
Location | 8,584,640 – 8,584,733 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 90.81 |
Mean single sequence MFE | -30.68 |
Consensus MFE | -19.53 |
Energy contribution | -20.01 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.18 |
Mean z-score | -4.86 |
Structure conservation index | 0.64 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871999 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3R_DroMel_CAF1 8584640 93 - 27905053 AUAGUUGCGAGUAUGC--A-GUUUUUUAG-CUGCAGAGCAGCUGCAGAAAGUUGCUCAUCUGAUUACAUAUUUAUUCGCAAUUUAUGCAUAAUUCUA ..((((((((((((((--(-(((....))-)))))((((((((......))))))))...............))))))))))).............. ( -33.70) >DroVir_CAF1 15371 97 - 1 UUCCUUGCAAAUCUGUUAAGGUAUUAUAUUUUGUUGAGCAUCUGCAGCUAGUUGCUCAUCUGAUUACAUAUUUAUCUACAAUUUAUACAUAAUUUUG ..(((((((....)).)))))...((((..((((((((((.(((....))).))))))...(((.........))).))))..)))).......... ( -15.60) >DroSec_CAF1 12207 93 - 1 AUAGUUGCGAGUAUGC--A-GUUUUUUAG-CUGCAGAGCAGCUGCAGAAAGUUGCUCAUCUGAUUACAUAUUUAUUCGCAAUUUAUGCAUAAUUCUA ..((((((((((((((--(-(((....))-)))))((((((((......))))))))...............))))))))))).............. ( -33.70) >DroSim_CAF1 24455 93 - 1 AUAGUUGCGAGUAUGC--A-GUUUUUUAG-CUGCAGAGCAGCUGCAGAAAGUUGCUCAUCUGAUUACAUAUUUAUUCGCAAUUUAUGCAUAAUUCUA ..((((((((((((((--(-(((....))-)))))((((((((......))))))))...............))))))))))).............. ( -33.70) >DroEre_CAF1 23820 93 - 1 AUAGUUGCGAGUAUGC--A-GUUUUUUAG-CUGCAGAGCAGCUGCAGAAAGUUGCUCAUCUGAUUACAUAUUUAUUCGCAAUUUAUGCAUAAUUCUA ..((((((((((((((--(-(((....))-)))))((((((((......))))))))...............))))))))))).............. ( -33.70) >DroYak_CAF1 14352 93 - 1 AUAGUUGCGAGUAUGC--A-GUUUUUUAG-CUGCAGAGCAGCUGCAGAAAGUUGCUCAUCUGAUUACAUAUUUAUUCGCAAUUUAUGCAUAAUUCUA ..((((((((((((((--(-(((....))-)))))((((((((......))))))))...............))))))))))).............. ( -33.70) >consensus AUAGUUGCGAGUAUGC__A_GUUUUUUAG_CUGCAGAGCAGCUGCAGAAAGUUGCUCAUCUGAUUACAUAUUUAUUCGCAAUUUAUGCAUAAUUCUA ..((((((((((((((................)))((((((((......))))))))...............))))))))))).............. (-19.53 = -20.01 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:55:56 2006